barSeed - Barley Seed Development Database

Probe CUST_24736_PI390587928

Source Contig U35_8538

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_24736_PI390587928	Hv_44K_v2	AAATGTTTATCTGTCAGCATGTAAGAAGCCTCCTTAATGTGTATTTCTTGACACAACTCA	745	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_64388.8	2976	2e-24	2847 - 2906	100	60 / 60	plus	ABC19630 ABC24807
MLOC	MLOC_64388.16	594	2e-24	403 - 462	100	60 / 60	plus	ABC19630
MLOC	MLOC_64388.14	4073	2e-24	3943 - 4002	100	60 / 60	plus	ABC19630 ABC24807
MLOC	MLOC_64388.13	4065	2e-24	3935 - 3994	100	60 / 60	plus	ABC19630 ABC24807
JLOC1	JLOC1_42278.4	4071	8e-25	3815 - 3874	100	60 / 60	plus
JLOC1	JLOC1_42278.3	3003	8e-25	2747 - 2806	100	60 / 60	plus
JLOC1	JLOC1_42278.2	4087	8e-25	3831 - 3890	100	60 / 60	plus
JLOC1	JLOC1_42278.1	3019	8e-25	2763 - 2822	100	60 / 60	plus
Harvest21	ABC19630	805	3e-25	746 - 805	100	60 / 60	plus	ABC19630
Harvest35	U35_8538	805	3e-25	746 - 805	100	60 / 60	plus

Contig Sequence (805 bp)

>U35_8538 805 Hv_44K_v2
GCCGCTCACCGCCATCTCCGGTGCCCTGGCCTCCCGCGGCGGCCCCGCCCTCTACCTCTT
CACCGTCTTCGTACGGGTCCCTGCGCAGGTGATTGGGGCAGTTATTGGAGTGATGCTCAT
GCGATTCGCATTCCCTAAAGTAGGTAAAGGAGCCGCGTTAAACGTCGGTGTTCATCATGG
GGCTTTAACTGAAGGACTGGCAACCTTGATGGTTGTTATGGTGTCATTGACACTTAAAAA
GAAAGAACAGGGGTTCTTTGTGAAGACATGGATCGCCAGCATTTGGAAAATGACGATTCA
TATCCTTAGCTCAGATATTACTGGAGGAATTATGAACCCTGCATCTGCTTTTGCCTGAGC
CTATGCTCGTGGAGATCACACATCATTTGACCACCTACTGGTATATTGGCTTGCACCCCT
CCAAGCAACCCTTGTAGGGGTATGGGTGGTTACCTTCTTAACTAAACCCAAGAAGACCAA
GGAGCAAGAAGCAGATAAAAACAAGAACAAAAAGGAATAGACTTCAGGAAGTGAGCCTAG
CTCGCTTGGTTCGGGAGTGGATGTACATACAATACCATCACCTGGGTTGAAGTCCTCATG
GACTTGAATTTAGGTTCTATTTGGCTTTCCTTCAAGTATTCCTTCAGAGAAAATGAAGAA
GGAATATTGTTATTGTGGGAGTGGTGTCCACCATTTTTTCTGGAGCAAGAACTCCAGATC
ATATAATCATATGATCATTATTCTAAAATGTTTATCTGTCAGCATGTAAGAAGCCTCCTT
AATGTGTATTTCTTGACACAACTCA

Homology of Contig U35_8538 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g20410.1	251	1e-90	protein\|aquaporin SIP2-1, putative, expressed
Brachypodium v1_2	Bradi1g64000.1	195	4e-73
Arabidopsis v10	AT3G56950.2	260	1e-53	\| Symbols: SIP2;1 \| small and basic intrinsic protein 2;1 \| chr3:21078411-21079644 REVERSE LENGTH=260