barSeed - Barley Seed Development Database

Probe CUST_24732_PI390587928

Source Contig U35_8542

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_24732_PI390587928	Hv_44K_v2	GATGGTTTTCGAGGTGTGTTTACTGCTTGTGACACTGTAGATGATGATCTGAAAGTCAAG	1257	GeneList: plum2 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.486	0.623	1.104	2.673	1.291	1.548
Raw	24.200	52.716	74.577	270.365	51.123	65.815

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_44776.1	728	3e-21	357 - 416	97	58 / 60	minus	None
MLOC	MLOC_44776.2	798	3e-21	311 - 370	97	58 / 60	minus	None
Harvest21	ABC17868	1464	3e-25	1258 - 1317	100	60 / 60	plus
Harvest35	U35_8542	1464	3e-25	1258 - 1317	100	60 / 60	plus

Contig Sequence (1464 bp)

>U35_8542 1464 Hv_44K_v2
TTCCTTACCACCCCTGATCTAGCGTTTGTTTCTTTTCCGCGGATGCGTGGAAGACGATCG
ATCTCGTGGGAGGCGCTCTGGAGATGCAGATGGATCAATCGGGTGGCGGGGATGCAGATG
GATCGATCTCGTGTGCGGCGCCGACGACCGTGTCGAGGGCCCCCGGTTTCACCCGGGTTT
CTCCCTTGCCTACTGTGAATGGCGAACAAGTGCCTGTTGCTCCTGCCGCCGCCGCCGCCG
TCGCCGCCGCCAAGGGGAAGAAGAAATCCAGGGCGAAGAAGGCTGCGCATCCGCGGATGC
ACTTGGACAAGGCTGAATCCGTTGCGTACAAAGCCAATATGATGGCGAGGGAGGCTGCCA
TGGTAGCCAAGGCCAAGGCCGAGGAGGCCCAAGAAGCTGCCAGGATAGCCAAGACCAAGG
CCGAGGAGGCTGAAGAAGCTGCCAAGGCCGCCGAGGTGGCGGCGGAGGAGGCCGCCAAGG
CGAACGAAGCAGAAGACGAGGCGGGTCAGCTCTTCGAGAAGGAGACGGAGTGGGCGCAGT
GCGAGGAAGAATTGTTCGCCTCCAGGTTCCGCGCCTACTGGAACAGACAGCACGCCCGCT
ACGGCGCCACCTTCCAGGAAACTAGTAAAGCACCTCCTCTTCCTTGCAATTACTTCCATT
TTTCTGCAATCAATCGAATGAAACCACCAATTTTACATCGCCAATCCATACTGTCATTGC
TTACATGCAACAACTAACTAGACCATTGTTGATTGATGTGATGCAGCATCTATCCCGCCT
ATGCGTTACACTTACCCTACTCCGGAGGAGCGGTACTACATCAAGACCGCGGAAACTCTG
CAGATCGTTTCTCTCAAAATCGTGTCCATCAATGACACTTTACACTGGCCACTGGAAGTG
TTTGGTATGGTTGCCGTGCGTGATATCTTGGATCACAAGCGCAACATTATCTTCCAGCGA
CAGAGGAATAACTGCCAAATCATCAATGCCAATGATCCATACCTAGCATTGACAGGTCCA
AGCCGTGCCGTTGCTGTGTCGATGGAACCTTCGCACATTGAGATTTCACTGAAAGTGAAG
GGGGCCACTAAATCTGATGATAAAGACCTAAGCGAGCTAGTTTTGAATTTTAGATCTGGA
TGTGTGCTTGGAGGCATTTACCCTAGCAGGCTTAGCACGCTGGAATTTAAATACGATCAC
ATTCCATGCGCTGTGGAGGCCACGATAAGCATAAAAGTCACTGGTGGGTCTTGGCCAGAT
GGTTTTCGAGGTGTGTTTACTGCTTGTGACACTGTAGATGATGATCTGAAAGTCAAGTTA
CTTGGTTTTGAAGATGGTGGATTGCCTGTTGGTGCTGATGGCATGATCAAGCTCTCACGC
AGTGTGGTTTCCGCTGGCATTGATGAGATGCTCAAAGTTTCTGCCATGGTATATCCTATT
AACGGCGATAAAGTTGCTGATAGT

Homology of Contig U35_8542 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi4g37660.1	470	1e-98
Arabidopsis v10	None