barSeed - Barley Seed Development Database

Probe CUST_2472_PI390587928

Source Contig U35_38259

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_2472_PI390587928	Hv_44K_v2	GTTTTCCTTCATATGTCCATATGTATCATCAGGCATCTCCCAGGGGTGGAACACTATACC	315	GeneList: bisque4 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.169	1.972	1.572	0.900	0.535	0.698
Raw	98.165	249.488	177.231	159.332	32.315	47.398

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC34150	613	3e-25	316 - 375	100	60 / 60	plus	ABC34150
Harvest35	U35_38259	613	3e-25	316 - 375	100	60 / 60	plus

Contig Sequence (613 bp)

>U35_38259 613 Hv_44K_v2
GATATATAAGACAAAACTCGTTCATTTAACATTTATCATTTGGCGTATATTGCTATCGAT
ATTCTCCATGAATACATCTTCCTGTTCCATAATTCATACCCTATGATCACTATATTTTGA
CAGGACCCCGTTACTGGCAGTATACATTGTGTTTTGGCACCCTATTGGGGCAGAAAGCTG
GGGAAGCAAAAATTGACGGCATTTCAAGTACGTGCTTAGCTATGTTTTCAGCAATTTAAT
ATGGACTTCGAAAAAAATATTTTATTTAAAAAATGATGCTGCAACATGCACTCGGTCAGT
TGAACCATGATGTTGGTTTTCCTTCATATGTCCATATGTATCATCAGGCATCTCCCAGGG
GTGGAACACTATACCTGCAACTGGATGACGCAAATCAGAGAGTGCAAATCCAGGGAGAAG
CTCTAACTGTGATGGATGGAACGCTCCTAGCCTAGCCAGCATGCCTTTGGCAATTTCGCA
TCCATGATCCATCTACTCGTATATGCTTTGAATTGAAGGACAACCATTCGTCCATCTACT
CGTATATTCATGGAGTTATGATTTGACTTTGGATAGTGGTGATTCTGTTTGTTGTTAAAA
AAAAAAAAAAAAA

Homology of Contig U35_38259 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None