barSeed - Barley Seed Development Database

Probe CUST_24728_PI390587928

Source Contig U35_8547

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_24728_PI390587928	Hv_44K_v2	ATGTCAAGCCACAGAACATACTCTTTGATGCCGACTTTGAGCCACACCTGTCTGATTTTG	542	GeneList: darkgreen MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.481	2.140	5.468	3.307	0.830	0.739
Raw	3.457	37.384	78.169	76.845	5.231	4.895

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_37098.1	3543	2e-24	2771 - 2830	100	60 / 60	plus	ABC26292
MLOC	MLOC_37098.2	4076	2e-24	2771 - 2830	100	60 / 60	plus	ABC26292
JLOC1	JLOC1_23980.1	3836	8e-25	2699 - 2758	100	60 / 60	plus
Harvest21	ABC21121	687	3e-25	543 - 602	100	60 / 60	plus
Harvest35	U35_8547	704	3e-25	543 - 602	100	60 / 60	plus

Contig Sequence (704 bp)

>U35_8547 704 Hv_44K_v2
GGTTGAGCGGCGTGATGGCGTCAAGAAGAGGCGACGCAGCCCTGGACGGGGCAGTGGGTC
GAGCGGCACAAGCACGGAGAGCCAGACGAAGCTGGTCATGTTCAATTCCAGGATCACCTA
TGCAGACACGGTGGAGGCGACACGGCAGTTCGATGAGGAGAATGTGCTTAGCCGTGGCCG
CCATGGCCTCATGTTCAAGGCTTGTTACAGCGAAGGGACCGTGCTGGCCATCTTACGGCT
TCCTTCAACCTCAGCTGATGGCGCCGTGGTGGTCGAGGAGGGCTCGTTCAGGAAAGAGGC
CGAGTCTCTAGGCAGGGTGAAGCACAGAAACCTCACCGTTCTCCGTGGCTACTACGCCGG
GCCGCCGCCGGATGTTCGTCTGCTGGTATATGACTACATGCCCAATGGCAACCTCGCCAC
ATTGCTCCAGGAAGCATCTCACCAAGACGGGCACATCCTCAACTGGCCAATGAGGCACCT
CATCGCCCTCGGTGTCTCCCGCGGCCTCGCGTTCCTCCACCAGTCCGGCGTGATCCACGG
AGATGTCAAGCCACAGAACATACTCTTTGATGCCGACTTTGAGCCACACCTGTCTGATTT
TGGGCTTGAGCCGATGGTGGTGACTGCGGGTGCCGCAGCCGCCGCCGCCGCCGCTGCATC
AACGTCGGCTACGACACCGGTTGGTTCTCTTGGCTATGTCGCCC

Homology of Contig U35_8547 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g48760.1	1105	3e-120	protein\|leucine-rich repeat family protein, putative, expressed
Brachypodium v1_2	Bradi5g19017.1	1162	1e-123
Arabidopsis v10	AT4G36180.1	1136	1e-84	Leucine-rich receptor-like protein kinase family protein \| chr4:17120209-17123698 REVERSE LENGTH=1136