barSeed - Barley Seed Development Database

Probe CUST_24727_PI390587928

Source Contig U35_8548

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_24727_PI390587928	Hv_44K_v2	ACCTGACGTGCAGGTGGAGGAGTTCTGCCGCGCCATGTGCGGCTTCCACTACTTCACCTT	535	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_57293.1	1710	2e-24	1012 - 1071	100	60 / 60	minus	ABC26584 ABC49894
JLOC1	JLOC1_37111.1	1437	8e-25	766 - 825	100	60 / 60	minus
Harvest21	ABC48455	588	3e-25	499 - 558	100	60 / 60	plus
Harvest35	U35_8548	625	3e-25	536 - 595	100	60 / 60	plus

Contig Sequence (625 bp)

>U35_8548 625 Hv_44K_v2
GTGCCACTACCACTTCACTCCACTCAATCCCCAAAATGGGGAGGCTGCTTCCGGGTCACC
CTACCCTTACCCTCCTCCCCCTCCTCTTCGCCGCCGCCGCCATCGCCGGCGTGCGTTGCG
CGCCGGTGTACAGGCCGGAATACCTGGTGGACGGGAACCAGCTCGTAGACATGCAGTACC
ACATGGGCCCCGTCGTATCGGGCGCGCCGACCAACCTCTTCCTCATCTGGTACGGCCGGT
GGGAGGACCCGGCGCAGGCTGTGCTCCGCGACTTCCTCGCCTCCCTCTCAGCTCCAGCGC
CGTTCCCCGCCGTCTCCGACTGGTGGGTCCGCACGCCGCGGCTCTACACGGACCAATCCG
GCGCCAATGTCACCGCCACATTCGCCGTCGCCGGGGAGCACTCCGACGCCGGGTACTCCC
ACGGCGCCTCCCTGAAGCGGATCGACATGCAGTCCATCATCCGCACCGCCGTGGTCGCGT
ACCCGGACCCTCTGCCGCTCGACCCGTACAACGGCGTGTACCTGGTGCTCTCCTCACCTG
ACGTGCAGGTGGAGGAGTTCTGCCGCGCCATGTGCGGCTTCCACTACTTCACCTTCGCGT
CCGTGGTCGGGGTCACCGTGCCGTA

Homology of Contig U35_8548 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g31430.1	328	1e-93	protein\|phosphate-induced protein 1 conserved region domain containing protein, expressed
Brachypodium v1_2	Bradi1g26950.1	340	7e-95
Arabidopsis v10	AT2G35150.1	323	2e-51	\| Symbols: EXL1 \| EXORDIUM like 1 \| chr2:14817220-14818191 REVERSE LENGTH=323