barSeed - Barley Seed Development Database

Probe CUST_24726_PI390587928

Source Contig U35_8550

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_24726_PI390587928	Hv_44K_v2	GTCTTCTTCGATCTCAAGATGCTAAAAATGGCGAACTGTCCATACAGGAAAATATTTTAG	713	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK252850.1	1625	2e-24	722 - 781	100	60 / 60	plus	ABC19303
Harvest21	ABC16801	773	3e-25	714 - 773	100	60 / 60	plus
Harvest35	U35_8550	773	3e-25	714 - 773	100	60 / 60	plus

Contig Sequence (773 bp)

>U35_8550 773 Hv_44K_v2
GCACGCATTGTGTTTCCACCTGCGCTGCGCAACCTCCGGTCGATCCGGCCCTTCCCCTTC
TCTTCGACCCATCCCCGCTGCAAAACCGTCGGTGGCGTCGCCCTTCCACCGCGCCGCCAC
TCCACTATCCATCCTCCGCCGCCCTCGTCCTCCTTTCCGTCACACAGGACAAACATTCAA
AGAGCAGGGAGCGAGCGAGCGAGTGCCCGCACACGCGTCACTTCTCCGATCTGGTCCGGC
TGTTCCGCCAGAGAGCGAGCCCGGAATTCCGCCTTTGTTGTAGCTGCCGCTGCGTGCTGC
CAATTCCAAAGGTCGACTCACAGGACTGAAGAGGCGGCTCCTTCCTTCTCGATTCATCAG
GCTTCCGACACGCGCCCGTGCCACAATGTCAGAGGACAAGGGCCGCAATCGCGGCGGTGC
GCGGGTGAAAGCCCGGGAGGCGGTCTGCAACGCCGTCGCCGGCGGTTCGGCTGGGGTCAT
CTCAGCGACGGTGTTGTGCCCGCTGGACGTGCTCAAGACGCGTCTGCAGGTGTACGGTCT
CCCTTCAAACCTTTCCCCTGGCACTGCGCCGCCTGGTAGGATAATTATTTCAGGATTGCA
ACACATACTCAAAACTGAAGGTCTTCCTGGGTTGTATCGTGGCCTTTCTCCAACAATAGT
AGCACTATATCCAACTTGGGCTGTTACATTTTCAGTTTATAACTACGTGAGGGGTCTTCT
TCGATCTCAAGATGCTAAAAATGGCGAACTGTCCATACAGGAAAATATTTTAG

Homology of Contig U35_8550 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g32980.1	317	2e-52	protein\|mitochondrial carrier protein, putative, expressed
Brachypodium v1_2	None
Arabidopsis v10	None