barSeed - Barley Seed Development Database

Probe CUST_24724_PI390587928

Source Contig U35_8552

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_24724_PI390587928	Hv_44K_v2	CATGTATTCCATGGATTTATGTAGCTGGTAATCATTCGTAAGATGAAAGGAAGCGACTTT	471	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.677	1.663	1.060	0.892	0.455	0.403
Raw	467.323	731.701	407.646	528.263	95.276	94.520

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK369263	1269	2e-24	1205 - 1264	100	60 / 60	plus	None
MLOC	MLOC_58414.3	886	2e-24	4 - 63	100	60 / 60	minus	None
MLOC	MLOC_58414.1	2009	2e-24	29 - 88	100	60 / 60	minus	None
MLOC	MLOC_58414.2	2174	2e-24	29 - 88	100	60 / 60	minus	None
MLOC	MLOC_58414.4	903	2e-23	1 - 58	100	58 / 58	minus	None
MLOC	MLOC_58414.5	1068	2e-23	1 - 58	100	58 / 58	minus	None
JLOC1	JLOC1_37945.2	989	8e-25	912 - 971	100	60 / 60	plus
JLOC1	JLOC1_37945.1	875	8e-25	798 - 857	100	60 / 60	plus
Harvest35	U35_8552	553	3e-25	472 - 531	100	60 / 60	plus

Contig Sequence (553 bp)

>U35_8552 553 Hv_44K_v2
CAAATTGAGTTCCTGTCCATGAAGCTCGAGGCTGTTAATGCCCATGCCCATGCTCACGAC
GGAGTTGAAACATTTCCAACTAAAGATTTTGCTGCGCCGACATACAACACAGCTCCAGGG
CTTACATTTGACCCACAAACACCAAGAGAGTACGCCCAGGGCTCGCCGGCTTCAGAATGG
CTTCACATGCAGATTGGCGGCACCTATGAAAGAGTGACATGAGCAGAACAAATTCAGGGT
GGCACCCAACAAAGCGTGCGATGAATCCTCGGCCAATCAACCCCCACTTTCATATCGTAG
ATCAATTTTTTTGTGCAACCATCTCGTTCCAAATGCGGTTTTATTCATAGTTTTTGGAGC
TGTAATTGCTGGTAGAGACGTCGGACATGTATTTAGAGAGAACCGCCGAGCACGGTGCCT
TTTTGTTTTGACCTTGGGATTCAGGACTGTTCCTCATGTATTCGCAACCTTCATGTATTC
CATGGATTTATGTAGCTGGTAATCATTCGTAAGATGAAAGGAAGCGACTTTTTTTCAAAA
AAAAAAAAAAAAA

Homology of Contig U35_8552 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None