barSeed - Barley Seed Development Database

Probe CUST_24721_PI390587928

Source Contig U35_8555

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_24721_PI390587928	Hv_44K_v2	TTATCTTTTCTTTCTTTCTGAACTGATGTGATGGAAGATGGTGGTGGTAGGCAGGGTAAG	797	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK365455	4540	2e-24	4423 - 4482	100	60 / 60	plus	ABC10309
MLOC	MLOC_38288.1	1524	7e-23	43 - 102	98	59 / 60	minus	None
MLOC	MLOC_38288.2	1486	7e-23	43 - 102	98	59 / 60	minus	None
MLOC	MLOC_38288.3	1489	7e-23	43 - 102	98	59 / 60	minus	None
MLOC	MLOC_38288.4	1513	7e-23	35 - 94	98	59 / 60	minus	None
JLOC1	JLOC1_24883.4	1680	4e-23	1385 - 1444	98	59 / 60	plus
JLOC1	JLOC1_24883.3	1718	4e-23	1423 - 1482	98	59 / 60	plus
JLOC1	JLOC1_24883.2	1715	4e-23	1420 - 1479	98	59 / 60	plus
JLOC1	JLOC1_24883.1	1683	4e-23	1388 - 1447	98	59 / 60	plus
Harvest35	U35_8555	879	3e-25	798 - 857	100	60 / 60	plus

Contig Sequence (879 bp)

>U35_8555 879 Hv_44K_v2
CAGGAGGCAGCCATCCATGCCTGTGTTGTACGTGCGTGTGTGCGCTGACTTACGCTCCAG
CTTACTGTGTGTCTGTTGTTAGTTATCCTTGACCGTCGAAGGCCGGGCGCTGGAGCCGGT
CGACCGGTCGCTGCTGATCTGTACCATGTGGTCTTATGCTAGGTAGTACTAGTTTAGTTG
TCTGTCTTGTTGTTAGATCCCCGGTAGTAGAGTTGAAAGAGGTCGCATTTCCTTGCTGGT
CCAGGAAGAAAGTGGCTGGTGCCTCCTATGGTACAGGGTATGCAAACACTCTGTAGCTTG
TTGACAGGCAGCCGCTCCTCCTACAGTTTTGACTGCAAAAGGATAGGGTACCAAGTGTTG
TTGGTCTAACCGTTCCGTTCCGTTTTGACTCTCCTTGTGCTCAAGTGAATGTTTGCTGAA
GACTCGAGTCTGATGACCTCCTCTTTGATTCAGTAAGCAGTGTGAAGTGCATGATGTTTA
CTGGATACTTGGCTGTAATTACGCTGAGAAAGATGAGTGCATGGAACAGAAGAAAGGTGG
CAACTTGTTAGGCTGTAACATAACAAGTTGGCAAGCACCACATGGCCGGCCAATCACCGT
CGTCCTTGTCGCTCGGTCTGTCTGTCTGTCTATGATGAGCGAGGAAGCTGGCATGATCGG
GTCTGTCTGTCTGTCTGATGAGCGAGGAAGCTGGCATGATCGGTTTGGTGCTGGGTCAGT
GCTTCTAACTGGACTTGTTCTGTGTTGGAAGGGAACAGCAATACTCTGCTGATGCAATGG
CATTGTGATGGAAGATGTTATCTTTTCTTTCTTTCTGAACTGATGTGATGGAAGATGGTG
GTGGTAGGCAGGGTAAGGGTGAGAAGCTCTCCTGTATAA

Homology of Contig U35_8555 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None