barSeed - Barley Seed Development Database

Probe CUST_24719_PI390587928

Source Contig U35_8558

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_24719_PI390587928	Hv_44K_v2	ATGGAATGAGTAGTCAATTAGTCAAGGCAATGCCAAGTCTTATTTTTACAAAAGTCCAGG	1061	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_65731.1	2412	2e-24	1049 - 1108	100	60 / 60	plus	ABC21895
JLOC1	JLOC1_43272.2	2430	8e-25	935 - 994	100	60 / 60	plus
JLOC1	JLOC1_43272.1	2318	8e-25	823 - 882	100	60 / 60	plus
Harvest21	ABC24994	630	3e-25	511 - 570	100	60 / 60	plus
Harvest35	U35_8558	1181	3e-25	1062 - 1121	100	60 / 60	plus

Contig Sequence (1181 bp)

>U35_8558 1181 Hv_44K_v2
GATCGAGCGGGGGCCGGGGGCACCGAACCTGGAGAGGCTACCCACCTGCGATTTCAATTC
CCAATCTCGACTTCTCCTCTGTCCCTCCGCCTGTCTCCGCCCCCCCGTGAATTCGCCGTC
GATCTCGCCGCCTATGCGTAATCCCACGCCCGGTTCCCCCCTTCCCGCCCCTCCCATGGC
AGCCGACGTCTCCATCCCCGCGTCGACTCTCTGCCTTCTGGTCTCCTCACAGCCGCGCAC
CCAGTAACCGCGCGCTGATTCTCCCCCTTCGTCTCCTCTGTTTCCAGGGCTAGTAGAGGA
TCGGTGCTTTGGAGCGAGAGTGTGTGTCTCGCAGGTTTAGAGTTCTCATTTGGCGCGTCG
GTGTTTGCTCTTCTCTTCAGTTGCACCAAAGGAAAGGAACTCTGACAAGATTTTTTGACG
AAACTCTGACAAGATGAACCGTGCAAGAAGAGGAGGGAGATCATTTCCCCTCTGGTTATG
TGCAGTGGTTTGTCTCATGGCTCAGCCGGGAGCTTGCAGTGTGGTGCTGATGGCGAATAA
TACCACCTTATCGTTCAGTGACGTTGAGGCAACATTTACTCCAGAAGTGAAAGGTTCAGG
TTTAAACGGTGTAATTTACACCGTCGAACCTCTTGATGCTTGCAGTCCTCTGACAAAGAA
AGCAGTCGAAGGTCCTGTATCACCATTTGCATTGGTTTTAAGAGGCGGCTGCCAATTTGA
TGATAAAGTTAGAAATGCTCAGGATGCCGGATTCAAGGCTGTGATAGTATATGATAACAA
AGACCACGGTGTCCTTGTTTCAATGGCTGGAAGTTCATCCGGTATCGACATATATGCGGT
CTTCATCTCTAAGACGTCAGGAGAGGTGTTGAAAAAATATTCAGGTCAAAGTGATGCTCA
GGTGTGGATAATATCAACGCGTGATAACTCAGCTTTGTCAATCATGGCAATTTCTTTCAC
AGCACTGCTTGCTATGTCTGCTGTTCTGGCCACTTGTTTCTTTGTGAGAAGACACCAAAT
GAGAAGGGACAGGGTTCGAATACCTGCAGCACGAGAATTTCATGGAATGAGTAGTCAATT
AGTCAAGGCAATGCCAAGTCTTATTTTTACAAAAGTCCAGGAAGACAATTGTACTTCGTC
AACATGTGCCATTTGCCTGGAAGACTACAGTGTTGGTGAAA

Homology of Contig U35_8558 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g01360.2	496	3e-129	protein\|RING finger protein 13, putative, expressed
Brachypodium v1_2	Bradi3g13140.1	518	3e-136
Arabidopsis v10	AT1G71980.1	448	7e-86	Protease-associated (PA) RING/U-box zinc finger family protein \| chr1:27098250-27099881 FORWARD LENGTH=448