barSeed - Barley Seed Development Database

Probe CUST_24718_PI390587928

Source Contig U35_8559

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_24718_PI390587928	Hv_44K_v2	GTGTAATGTACTGTATTTTAGTATGATTTTATAGAGTGGTGGATGCTCGTGGTTCAACTA	683	GeneList: royalblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	5.535	5.000	1.352	0.693	0.309	0.414
Raw	362.242	549.788	119.706	102.589	14.277	22.129

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK355648	742	2e-24	655 - 714	100	60 / 60	plus	ABC19333
MLOC	MLOC_67999.1	559	2e-24	285 - 344	100	60 / 60	plus	ABC19333
JLOC1	JLOC1_44957.1	464	8e-25	285 - 344	100	60 / 60	plus
Harvest21	ABC19333	758	3e-25	683 - 742	100	60 / 60	plus	ABC19333
Harvest35	U35_8559	759	3e-25	684 - 743	100	60 / 60	plus

Contig Sequence (759 bp)

>U35_8559 759 Hv_44K_v2
ACGAGAGGAGGAGCAGCCTCCTCCGCGCCACACACACCGCCACTCCTCACCGCACGCGCG
CCTGAGGCCGAGCCGATCGAGCAGACGCGCGCGAGCCCGGCACACCTCACCGCCGGCCAT
GGCCGTCTCAGCCGCCTCCAGCCTCGCGCTCCAAGCCGCCCCGCGCCGCATGCGCAGCGT
CGTCGTCGCCTCGGCCCGCGCGGTTCGACCGGCGCTCGGCCGTGCTCCTCCTGCTGTCGG
CCGCGGGCGCGGGGTCGTCCTTGGCGGCGGTGGCGCCGGCCGCGAACGCCGCGGGCAGCA
TCGGGCTCTTCGGCATCCGGAAGAAGCTGGAGCGGGCGGAGGAGGCCGCGGTCGAGGCCG
CGCGGGAGGTGGGCGAGGCGGCGGTGGAGGCCGCGGAGGCCGGCGGGGAGGCGGTGGCGG
AGGCCGGGAAGGAGGTCGCCGGGGAGGGAATGCAGCTGGCGGCCGAGGCGGGGCTCGCCG
GCGACGCGTTCGTGCAGGCCGGCGTGGTCGCCGGCGCCGAGGCGCTCGGGGTCCTCGTCG
GCTTGTCCGTCGTCAACGGCATCCTCAAGCCCGAGGCCTAGAGGGTTAGTGGGCCCGGCC
AGTAGTGTTTTTGCTGGCCCATTCGTGTTGGGTTTAGTGCTTACAGAAAATTCTGCCTAT
CATTATTTGTTAACGACTTTGTGGTGTAATGTACTGTATTTTAGTATGATTTTATAGAGT
GGTGGATGCTCGTGGTTCAACTAAAAAAAAAAAAAAAAA

Homology of Contig U35_8559 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None