barSeed - Barley Seed Development Database

Probe CUST_24716_PI390587928

Source Contig U35_8561

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_24716_PI390587928	Hv_44K_v2	GTTCTCAGAAGCAAGAAGAAGAATACAAAGCTCGTCTCTTACTATATTGAGTATTGTCAA	251	GeneList: grey MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.188	2.048	0.350	1.004	1.336	1.296
Raw	16.445	35.542	5.399	25.055	13.960	14.256

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC18381	384	3e-25	252 - 311	100	60 / 60	plus	ABC18381
Harvest35	U35_8561	384	3e-25	252 - 311	100	60 / 60	plus

Contig Sequence (384 bp)

>U35_8561 384 Hv_44K_v2
GCACGAGGATTGGAATATAGCATTGAAAAGAAATCAGCCTTCTGCTTTTATTATTTTCCG
TTTAAGCAACCAAGAGTTGAAAACTATGGTATTGAAGCAGTCACGAAACATGGATTCAGG
ACTTGGAAGGATGGGCCTAAAGTTTTTAATCAACATGTTGGCAAGCATGATAGTGCTCAT
AGTAAATCTAGGCAACATTATGAGGATTTCAAAAATCAAAGACAAAAATCTGCCACATGT
GTTTGATAGGGGTTCTCAGAAGCAAGAAGAAGAATACAAAGCTCGTCTCTTACTATATTG
AGTATTGTCAAATTTTGATTTTCCTTTTGTATACAGAATCTTTCATAATAAATCTTTTGT
ATCATCTAAAAAAAAAAAAAAAAA

Homology of Contig U35_8561 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None