barSeed - Barley Seed Development Database

Probe CUST_24714_PI390587928

Source Contig U35_8563

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_24714_PI390587928	Hv_44K_v2	GGTCTAGAAATTGTCTGAACAAGAACATGTGTATCTTGTAACCCTTCAAAGATTAGCTTA	1261	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_54122.4	1961	2e-24	1891 - 1950	100	60 / 60	plus	None
MLOC	MLOC_54122.2	4021	2e-24	2463 - 2522	100	60 / 60	minus	None
MLOC	MLOC_54122.1	4060	2e-24	2478 - 2537	100	60 / 60	minus	None
MLOC	MLOC_54122.3	3762	2e-24	2368 - 2427	100	60 / 60	minus	None
MLOC	MLOC_54121.1	2915	2e-24	1250 - 1309	100	60 / 60	minus	None
JLOC1	JLOC1_34827.4	3572	8e-25	1556 - 1615	100	60 / 60	plus
JLOC1	JLOC1_34827.3	4412	8e-25	2396 - 2455	100	60 / 60	plus
JLOC1	JLOC1_34827.2	3503	8e-25	1487 - 1546	100	60 / 60	plus
JLOC1	JLOC1_34827.1	3405	8e-25	1389 - 1448	100	60 / 60	plus
JLOC1	JLOC1_34826.1	1939	8e-25	1250 - 1309	100	60 / 60	minus
Harvest21	ABC17896	1327	3e-25	1262 - 1321	100	60 / 60	plus
Harvest35	U35_8563	1327	3e-25	1262 - 1321	100	60 / 60	plus

Contig Sequence (1327 bp)

>U35_8563 1327 Hv_44K_v2
CGCCAACGCAGAGCTACGCGATGCTCCGCGCCTGCGGCGCCGCGGCTCCGGCGTCTGTGC
CCGCCCTCGTCAGGGCGCGCCTCGCGAAGCCCTCCTCCTCCGTCGCAGCCTCCGCAGTCG
CCTCCTCCTCCGCCCTGGAGGAGCTCGCCGCCGACCGCAAAGAGATCCAGCCTCTGCATT
AAATATGGAAAGGCTGCTCGAAGAAAGACTTTGTTCTGCGGTGGATTTACGGCGTAGTTT
GGGTTTCCCCTCAACTAATACAAATGCTTACCGTCTCGTCAATAGTGAAGGCGACAGATT
ATCTGGTCTGATAGTGGATATATTTGCTGATGTTGCCGTGATTGCTTCATCTGCTGCTTG
GGTTGAGAAATATAGGCAACAAATCCAGTCCCTTGTTAGCAAAGTTAGTGATGTTAACCA
TATAAAGTGGAGGTCATCAAGTGATATTCTAAAAGAAGAAGGATTAGATATGTCAGAGCA
AACAGAACCTGCACCCTCTTCATACTCTGGAACTGTGAAGGTTATGGAAAATGGCATTGT
CTATCTAGTCTCCATGGAGGGGCAGAAGACAGGTTTTTATGCAGATCAACGGGAAAATCG
CCACTTCATATCCACACTCTCGAAGGGCCAGAGGGTTCTTGACCTTTGCTGTTACAGTGG
TGGTTTTGCTCTTAGTGCAGCCAAGGGTGGTGCAACTAATGTTACTGGCATTGATTCATC
AGGATCTGCACTAGATCTTGCCAATGAGAATATTCTTCTGAATAAGCTTGATGCTGAGAG
AATTTCGTTCTTAAAAGAAGATGCAACTGCATTCATGAAAGGTGCTATCTCAAGAAATGA
GCTGTGGGACTTGGTAATCCTCGATCCTCCAAAGTTGGCACCCCGGAAGAAGGTGCTACA
AAGTGCATCCGGTATGTACAGAAGCCTGAACGCTCTTGCAATGCAAGTGGTAAAGCCAGG
GGGGTTGCTCATGACATGCTCTTGTTCTGGAGCTATGACCCAAAGTGGTCTCTTCCTTAA
AACCATTCAGGGTGCTGCATCAATGGCCGGTCGAAAGGTTACAGTTTTACGTCAAGCAGG
AGCAGCTTGCGATCATCCCATCGATCCTTCATATCCTGAAGGCCAATATCTCAGCAATTA
CCTACTCCGAGTAATGTGAAAAAGGAACAGTCAAAACAATTTACTGACCAGTAACCATTT
CTGAAGAGCTGATTTCTGAAGTTTTACCTCCAGTTGATGTTATATTTTAGTCATAAGGTT
AGGTCTAGAAATTGTCTGAACAAGAACATGTGTATCTTGTAACCCTTCAAAGATTAGCTT
ATCAACT

Homology of Contig U35_8563 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g07740.1	466	0.0	protein\|RNA binding protein, putative, expressed
Brachypodium v1_2	Bradi3g05437.1	449	0.0
Arabidopsis v10	AT1G54310.2	454	7e-162	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein \| chr1:20273567-20275449 FORWARD LENGTH=454