barSeed - Barley Seed Development Database

Probe CUST_24704_PI390587928

Source Contig U35_8573

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_24704_PI390587928	Hv_44K_v2	GATGAACTCAGCATGTAGTAGATGCTTATCTTGCTATTGAAACTCGTGAGAATTGTTTAA	704	GeneList: green MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.094	1.385	1.436	1.240	0.458	0.376
Raw	141.493	289.974	256.122	348.291	45.825	40.348

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_81731.2	3104	6e-24	2614 - 2672	100	59 / 59	plus	ABC17073
MLOC	MLOC_81731.1	3096	6e-24	2614 - 2672	100	59 / 59	plus	ABC17073
JLOC1	JLOC1_54369.1	2563	3e-24	2207 - 2265	100	59 / 59	plus
Harvest21	ABC17073	778	3e-25	15 - 74	100	60 / 60	minus	ABC17073
Harvest35	U35_8573	778	3e-25	705 - 764	100	60 / 60	plus

Contig Sequence (778 bp)

>U35_8573 778 Hv_44K_v2
GTAAAGCTGCTGATGTTTTACAAACTATGACCGCAAATGGATTTGAAGTTGATACAGTTA
CATATGCAACACTCATTAATGGCCTGTGCAAGGCTCGTCGGACTCAGGCTGCTTTGAAGC
TTCTTAGAGGTATGCGGATGAAAGGGATGAGGCCAACTCCAAAAGCCTTCAATCCTGTGA
TCCAGTCTCTGTTTAGAGGGAATAATAGCAGAGATGCTCTGAATCTGTATAGGGAGATGA
CAGAAGTTGGCGAGCCTCCTGATGCTTTGACATATAAAATTGTTTTCCGTGGTCTCTGTC
GTGGTGGTGGCCCTATTAAAGAAGCTTTTGATTTCCTGGTAGAGATGGCAGATAAGGGTT
TCATACCAGAGTTTTCATCATTCCGCATGCTAGCTGATGGTCTACTGAACCTGGGTATGG
ATGATTACCTCATAAGTGCTATTGAACTAATTGCAGAGAAGGCCAACTTCAGAGAGTCCG
ATGTTTCTGCAATAAGGGGTTATCTCAGGATTCGTAAGTTTTATGATGCATTAGCAACTT
TTGGCCGTCTCCTGGATATCAATAACCCTCGATGGACTTATCGATGAAACATGAGAAAAT
AGTATCTGGGAAAGTACTGGGTACATGAATTTTTTTGCTGGTTAGTTCATCAGGATAGAT
CTTGTTTAATTATGAATAGATGACTATGCTTGTTACTTGGTGGGGATGAACTCAGCATGT
AGTAGATGCTTATCTTGCTATTGAAACTCGTGAGAATTGTTTAAAAAAAAAAAAAAAA

Homology of Contig U35_8573 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g40020.1	743	2e-110	protein\|PPR repeat containing protein, expressed
Brachypodium v1_2	Bradi4g14080.1	758	7e-120
Arabidopsis v10	AT3G53700.1	754	1e-72	\| Symbols: MEE40 \| Pentatricopeptide repeat (PPR) superfamily protein \| chr3:19900303-19902567 FORWARD LENGTH=754