barSeed - Barley Seed Development Database

Probe CUST_24703_PI390587928

Source Contig U35_8574

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_24703_PI390587928	Hv_44K_v2	TGTGAGAGAGACGGGCCCACAAAATGAGTCTCCTAATAACAATGGTCTTTCCAGCAAAAA	748	GeneList: darkslateblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.051	1.979	1.038	1.092	0.418	0.465
Raw	20.554	60.672	27.306	44.518	4.768	6.789

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_13910.6	1218	7e-23	886 - 942	100	57 / 57	plus	ABC20322
Harvest35	U35_8574	808	3e-25	749 - 808	100	60 / 60	plus

Contig Sequence (808 bp)

>U35_8574 808 Hv_44K_v2
GCACGAGGCTGCAAGGTGTTCTTGGAGGATTCAAGTGGCACTAGTTACTCAAAGGAAGGG
AGGCTAATAGGATATGATCCAACATATGATCTTGCTGTTCTGAAGGTTGATGTTGATGGT
GATAAGTTGAGGCCTGCTCTGCTTGGCACATCACAGGGTTTGCGAGTTGGGCAGAGCTGC
TTTGCTATTGGGAACCCTTTAGGATATGAACACACCTTAACTACTGGGGTGGTTAGTGGA
CTGGGGAGGGAGATACCATCTCCAAATGGGAGGGTGATTCGTGGGGCCATACAGACAGAT
GCTGCTATAAATGCTGGTAACTCAGGAGGCCCACTAATTGACTCTTATGGCCATGTAATT
GGAGTTAATACAGCTACATTCACACGTAAAGGATCTGGAATCTCATCTGGGGTGAACTTC
GCCATCCCTATCGACACCGTTGTACGGTCGGTACCGAATCTCATAGTGTATGGAACTGAT
GTGAGCAACAGGTTTTATTAAACATTTAATTAGCTCCTATGTACATTCTCTGCTCAGTCA
ATGCAAGATGTCTCTTAGGTCCTATGCACATTCTCTGCTCAGTCAATGCAAGTTGTCTCT
TTGCTACGTTCTTTACTGCTATCTGCTCAATGATGCTTCTTCAAGGGAGGTTCTGGTAAG
ATAAAAGAGAATATCTCGACTCATCAATAGTAACGAGCTCTCCAATACTAGAGTGTTACT
AAGACAAATAGTAATAGCAACATATTGATGTGAGAGAGACGGGCCCACAAAATGAGTCTC
CTAATAACAATGGTCTTTCCAGCAAAAA

Homology of Contig U35_8574 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g42210.1	314	2e-100	protein\|OsDegp15 - Putative Deg protease homologue, expressed
Brachypodium v1_2	Bradi4g01490.1	313	2e-104
Arabidopsis v10	AT4G18370.1	323	6e-80	\| Symbols: DEG5, DEGP5, HHOA \| DEGP protease 5 \| chr4:10149235-10151051 FORWARD LENGTH=323