- Probe CUST_24700_PI390587928
- Source Contig U35_8577
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_24700_PI390587928 | Hv_44K_v2 | CGGCCTCTCTTGTGTCCATTAAGCGACGCAGCCGCTCGTCCTGAATCCCATTGTAAACAT | 529 | GeneList: blue MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.504 | 1.342 | 1.044 | 0.907 | 0.375 | 0.467 |
| Raw | 993.308 | 1438.976 | 954.155 | 1349.692 | 187.498 | 253.936 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK376249 | 2504 | 2e-24 | 2389 - 2448 | 100 | 60 / 60 | plus | ABC14945 |
| MLOC | MLOC_54985.1 | 1414 | 2e-24 | 193 - 252 | 100 | 60 / 60 | minus | ABC14945 |
| MLOC | MLOC_54983.14 | 2910 | 2e-24 | 1713 - 1772 | 100 | 60 / 60 | minus | ABC14945 |
| MLOC | MLOC_24931.1 | 502 | 7e-23 | 96 - 155 | 98 | 59 / 60 | minus | ABC14945 |
| JLOC1 | JLOC1_35439.1 | 2894 | 8e-25 | 1142 - 1201 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_35437.1 | 5349 | 8e-25 | 3984 - 4043 | 100 | 60 / 60 | minus | |
| JLOC1 | JLOC1_17100.1 | 1072 | 4e-23 | 40 - 99 | 98 | 59 / 60 | minus | |
| Harvest21 | ABC14945 | 681 | 3e-25 | 530 - 589 | 100 | 60 / 60 | plus | ABC14945 |
| Harvest21 | ABC14944 | 989 | 1e-23 | 886 - 945 | 98 | 59 / 60 | plus | |
| Harvest35 | U35_8577 | 681 | 3e-25 | 530 - 589 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_31322 | 554 | 1e-23 | 450 - 509 | 98 | 59 / 60 | plus |
Contig Sequence (681 bp)
>U35_8577 681 Hv_44K_v2 GCACGAGGGCCAGCACGGGCTGTACCGGAACCTGGTGTGGCTGTTTGTGGTCGGCGCCGT GCTGCCGGTGCCGGTGTGGCTGCTGAGCCGGGCGTTCCCGGAGAAGAAATGGATCGCGCT CGTCAACGTGCCCGTCATCTCCTACGGCTTCGCCGGGATGCCGCCGGCCACGCCCACCAA CATCGCCAGCTGGCTCGTCACTGGCACCGTCTTCAACTTCTTCGTCTTCAGGTACCGCAA GGGGTGGTGGCAGAAGTACAACTACGTGCTGTCGGCGGCGCTCGATGCCGGCACCGCCTT CATGGGGGTGCTCATCTTCTTCGCGCTCCAGAACGCGCACCACGACCTCAAGTGGTGGGG CACCGAGGTCGACCACTGCCCGCTCGCCACCTGCCCCACTGCGCCCGGCATCGTCGTCAA GGGCTGCCCGGTCTTCTGAGCACTGAGCTCGCCGGAGCATCGGACAGTGCCCACCATGTA TGTGGCTGGCAGTGATCATCGTCTGGATTGGTAGAGGAAGCCATGAATTCGGCCTCTCTT GTGTCCATTAAGCGACGCAGCCGCTCGTCCTGAATCCCATTGTAAACATTGTGTGTGTGT GTGTGTGTGTGTTTTCTCCCAAGGAAATCAAAATTGNCCGGGTCTATATAAAATCCCATG TCACTCTGAAATATACTCATA
Homology of Contig U35_8577 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os03g54000.2 | 529 | 6e-97 | protein|oligopeptide transporter, putative, expressed |
| Brachypodium v1_2 | Bradi5g20190.1 | 737 | 8e-55 | |
| Arabidopsis v10 | AT4G16370.1 | 737 | 1e-86 | | Symbols: ATOPT3, OPT3 | oligopeptide transporter | chr4:9247514-9250071 REVERSE LENGTH=737 |