barSeed - Barley Seed Development Database

Probe CUST_246_PI390587928

Source Contig U35_20074

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_246_PI390587928	Hv_44K_v2	AGTTATTGTTGAAAAGCCCTTCGGAAAGGATTTAGACTCTGCTGAGGAATTGAGTGCCCA	766	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_13014.2	1435	2e-24	546 - 605	100	60 / 60	minus	ABC03308 ABC03309
MLOC	MLOC_13014.1	1508	2e-24	621 - 680	100	60 / 60	minus	ABC03308 ABC03309
JLOC1	JLOC1_8772.1	1490	8e-25	811 - 870	100	60 / 60	plus
Harvest21	ABC12405	826	3e-25	767 - 826	100	60 / 60	plus
Harvest35	U35_20074	826	3e-25	767 - 826	100	60 / 60	plus

Contig Sequence (826 bp)

>U35_20074 826 Hv_44K_v2
CGTAGATGTGGATGTGGTGGAAGGTTCAGCCAGCGGGTCAAAGGGGAGTGGGAGTAGCCG
ATGCGAGTATAAAAGCGGCGGCGAGAAAGGAAAGCCATATATAATTTCCACCCAAAGCAA
AGCAAAATATTCCCATCCCACCGGCACCACCCCCCTCCTCCCGAAGTCAAGCCGCATCGT
CCCTTCAGTGTTCACTGGTTATCTTGAAAGGACGGAGAAACCATACAGACTAGACTACCA
TGTCAGGAGGATCGGGTGTATCTTCACCATCATTGGGACGAATTAGCACGAGTTCTTTGT
CAGACTTGCAGGACTTGGAGCTTTCTTCAGAGTCTGGCTGCTTGTCCATTGTTGTACTAG
GTGCTTCTGGGGACCTTGCTAAAAAGAAAACTTTCCCGGCACTCTTTAACCTTTTTCAAC
AGGGATTTATACAATCTGGGGAAGTCCATATATTTGGGTATGCGAGATCAGATATGTCTG
ATGACGGGTTAAGAGAACACATTCGTGGATATCTCAAAGGATCTTCAGATGAACATCTTT
CACAATTTTTGCAATTGATTAAATATGTTAGTGGTTCATATGATAATGGGACAGGATTTG
AATTGCTAAACAAGACAATCTCTGAGAATGAAACATCAGAGAACAACCAACCAGGAAACG
CCCGTAGACTATTTTATTTGGCATTACCTCCTTCAGTCTACCCCTCAGTATGCAAAATGA
TAAGATCATATTGCATGACTCCATCCTCTCATACTGGTTGGACAAGAGTTATTGTTGAAA
AGCCCTTCGGAAAGGATTTAGACTCTGCTGAGGAATTGAGTGCCCA

Homology of Contig U35_20074 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g38840.2	518	1e-95	protein\|glucose-6-phosphate 1-dehydrogenase, cytoplasmic isoform, putative, expressed
Brachypodium v1_2	Bradi3g47910.1	518	2e-96
Arabidopsis v10	AT5G40760.1	515	2e-70	\| Symbols: G6PD6 \| glucose-6-phosphate dehydrogenase 6 \| chr5:16311284-16314556 FORWARD LENGTH=515