barSeed - Barley Seed Development Database

Probe CUST_24699_PI390587928

Source Contig U35_8578

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_24699_PI390587928	Hv_44K_v2	CTTTATGATACACATACTCATCGGTGGCCCTCATATTATGACATGCATGAGAGGCGCAAA	449	GeneList: salmon MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	5.302	3.256	0.637	0.622	1.050	1.080
Raw	34.228	32.365	4.538	7.256	2.889	4.463

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest35	U35_8578	523	3e-25	450 - 509	100	60 / 60	plus

Contig Sequence (523 bp)

>U35_8578 523 Hv_44K_v2
GCGGACGTGACATCCCTAGGAGGACGGGTGCAGCATGTCTTCACGCTCTGCAAGGAGGAG
GACGGGGAAGGCAGCGCAGCAGCAGGCCGTGCTGGACTGCATTCTCTCAAGGAGGCTGTG
AGGCAGGCTCTGGCCAAGGTTGCTTCTCCAGAGCTGGTCTATGATAGCAGCAGCAGCAGC
AGCAGCAGCAATCAGTTTCAGTTACAGACCAAGAGGCAGAGGGTTCTGGAGTCGCATTAC
TCAATCATGTCCATATAGTAGATGATTACCACCAGAATATATCATCTTGAGGTGTGAAGT
GAACTGCTGTTAGTGCTGTAAGATAAGATAGATAGATGGCAACAATGGCTGCCGACATTC
AGATTGCAGAGATCCTAGCTGTAGCTGATGACGCCGGCAGGGTAACATGATTAGTTTGAC
GAGTCAGCAGTGGTGTCGATTGGCTGGTACTTTATGATACACATACTCATCGGTGGCCCT
CATATTATGACATGCATGAGAGGCGCAAAAAAAAAAAAAAAAA

Homology of Contig U35_8578 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None