barSeed - Barley Seed Development Database

Probe CUST_24696_PI390587928

Source Contig U35_18356

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_24696_PI390587928	Hv_44K_v2	GGGATACGACTCGTGTGATGGAGTATTTCTTTTGTCTGTACTGATCAATATTACTATAAA	1624	GeneList: blue MasterList: Sugar_nucleotide_interconverters_Function_Probe_Module

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.400	1.400	1.286	0.825	0.381	0.371
Raw	63.852	109.226	81.891	83.623	13.077	14.253

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_69982.2	2063	7e-23	436 - 492	100	57 / 57	minus	ABC08483
JLOC1	JLOC1_46405.1	1812	4e-23	182 - 238	100	57 / 57	minus
Harvest21	ABC08483	1717	3e-25	1625 - 1684	100	60 / 60	plus	ABC08483
Harvest35	U35_18356	1717	3e-25	1625 - 1684	100	60 / 60	plus

Contig Sequence (1717 bp)

>U35_18356 1717 Hv_44K_v2
CGCGCCGGCCTCTCCGTCCTCGTCACCGGCGCCGCGGGCTTCGTCGGCTGCCACGCCGCC
GCGGCGCTGCGCCGCCGCGGCGACGGCGTCCTGGGCCTCGACAACTTCAACGACTACTAC
GACCCCGCCCTCAAGCGCGGCCGGGCCGCGCTGCTCGCGCGCTCAGGGGTCTACGTCGTC
GACGGCGACATCGCAGACGCCGAGCTCCTCGCCAAGCTCTTCGACGTCGCGCCCTTCACG
CACGTCCTGCACCTCGCGGCCCAGGCGGGCGTGCGCCACGCGCTCGTTGACCCCATGTCG
TATGTGCGGGCGAACGTCGCTGGCCTCGTCGCGCTGCTCGAGGCGGCTCGCGCCGCGGAC
CCGCAGCCGGCGATCGTCTGGGCATCCTCGTCTTCGGTGTACGGGCTCAACTCCCATGTG
CCTTTCTCCGAGCATGACAGGACGGACCGACCCGCGTCTCTCTATGCGGCCACCAAGAAG
GCCGGTGAGGAGATCGCTCATGTCTACAACCACATCTATGGGCTCTCGCTCACCGCGCTC
CGGTTTTTCACTGTGTATGGGCCGTGGGGGCGCCCCGACATGGCATACTTCTTCTTCACC
CGGGATATTCTTGCTGGTCGGCCAATCACGGTCTATGAGAGCTCCGGTGGAGGCACACAC
CAGACCACCATTTCCAGGGATTTCACCTACATTGATGATATTGTGAAAGGATGTATTGGG
GCATTGGATACAGCTGGGCGGAGCACAGGCAGCGGCGGCAAGAAGCGAGGGCCAGCGCCA
TTCAGGACATACAATTTGGGGAACACTTCTCCAGTGCCGGTGACACAGCTTGTGGATTTA
CTGGAGAAGATGCTCAAGGTGAAGGCTGTGAGGAGGGTTGTCAAGATGCCAAGGAATGGG
GATGTGCCCTACACGCATGCCAACATCAGCCTTGCACAGCGGGAGCTTGGGTACCGGCCA
TCCACTGATCTCCAAACAGGGCTCAAGAAGTTTGTGCGGTGGTATCTTGAGTACTACAAT
CCTGAGTTGGCTGTGAAGCAGAAGCAGCATGGCAGTAGCAACGGCAAGGGTTCACGTGGT
CGGAACGGCAGCACGAGCAGCAGCGCAAGATGACTGACTATTCAGTTTCTGGATGGCCCT
CTTCTGACGGTGTGTATCAGAGTTCTAGTCCAGTACTTGATTCATCAGATTTTGAGAGGC
CCGTTTTACCCAGCGCCTTCAAGTGAAACGAAACAAGCATGAAGTAGTTAGTGTTGAAAA
CTGTTGCTTCTGTTTGCTTCCCTGTAGCTGCGCATCACTCCCTAGTTCCATTAGTTGGTT
CTTAGGATGACACTGCTAGGAAGATTATTCAATCATTTTGGGGAGCGGGCTGTGCATTGC
AAAGACTACGATAGATTCTTTTAGTGACATTTGTACCACGAGAGAGAAGGAAGTATATCA
TGACTGTTTCTTTTGTTCAATTGAGAAGTAGCTTTGATCAATATTTAGTTCTCTCGTGAG
TCTGAACCCTATCATATCTTACTGAAATTCATGCTAGTTTCCTGGATGGCGGTGCATATG
CCGTGCACCTGTGGTATAAAACATGTCTTTGCCCTGACAATGTCAAAATCTAGCTTTTCC
TCTGGGGATACGACTCGTGTGATGGAGTATTTCTTTTGTCTGTACTGATCAATATTACTA
TAAATATTTCTTATGGTTCAAAAAAAAGAATAAAAAA

Homology of Contig U35_18356 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g14540.1	485	0.0	protein\|UDP-glucuronate 4-epimerase, putative, expressed
Brachypodium v1_2	Bradi1g68040.1	482	0.0
Arabidopsis v10	AT4G00110.1	430	1e-158	\| Symbols: GAE3 \| UDP-D-glucuronate 4-epimerase 3 \| chr4:38702-39994 REVERSE LENGTH=430