barSeed - Barley Seed Development Database

Probe CUST_24655_PI390587928

Source Contig U35_20680

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_24655_PI390587928	Hv_44K_v2	TTGAGTACTCCATGAATGGTGTCGAGTTTTGGATCGTGAACACCGATGTACAGGCGATAA	640	GeneList: darkturquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.059	0.130	1.342	3.120	1.189	1.429
Raw	4.109	18.274	172.020	632.638	86.173	109.935

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_9203.2	2030	2e-24	1173 - 1232	100	60 / 60	minus	ABC12279
MLOC	MLOC_9203.3	2067	2e-24	1128 - 1187	100	60 / 60	minus	ABC12279
MLOC	MLOC_9203.1	1901	7e-23	634 - 693	98	59 / 60	plus	ABC12279
JLOC1	JLOC1_6031.2	2350	8e-25	881 - 940	100	60 / 60	plus
JLOC1	JLOC1_6031.1	2258	8e-25	789 - 848	100	60 / 60	plus
Harvest21	ABC14489	903	3e-25	625 - 684	100	60 / 60	plus
Harvest35	U35_20680	919	3e-25	641 - 700	100	60 / 60	plus

Contig Sequence (919 bp)

>U35_20680 919 Hv_44K_v2
ACCTCCTTCCCCAAATCTCTCTTGTGAAGCGCACGGCGGCGATATCTTGGGATTTCGGCG
CGGTCCGGCCTGAGTCGCTCGTGACTGTGCTGTGCCCTAGAGCTGCAGGCGTGCCGCGGT
CCGCCTTCTTCCGCGCCGCCGCCGCCGCCGCCATCGCCGTTCCCGTTCTACAAACCGACC
TCCAAATTTTCTGGGTGTGCACCGGCACGCCAGGCACAACATCTGGATCCGCTTCTGCCT
GCCATTCAGCTCGCTGGGATGGCGACGCAGCTGCCGTGCTTCACGCAGCTCACCCCGCCG
TCACCTGGATGGAGAAACGAAGCCGGGAGTCTCGGTGCTACATCTGGGAGGGCGTTGGTC
AGGAGCACTCCATTTCCGGGTCACTCTCACTTCAGGTGCCGCGCAAGCCCACGCAGCGCT
AACTCGTTTCAGAAGAAAGACTCCTTCCTGGACCTTCATCCGGAGGTGTCCCTGCTCCGA
GGCGAGCAGAACGACGAGTCTATTAACCCAAGGAAAGCTTCTTCTGATGGGAGCACGTTG
GAGGGGCTGGGGGTGCCGCCGAGCCAGGACGATTACAACGCTGCCAAGATCAAGGTCGTT
GGGGTCGGGGGTGGGGGTTCAAATGCTGTCAACAGGATGATTGAGTACTCCATGAATGGT
GTCGAGTTTTGGATCGTGAACACCGATGTACAGGCGATAAGGATGTCCCCTGTGCATTCC
CAGAACAGGCTGCAGATTGGGCAGGAGCTCACTCGGGGTTTGGGTGCGGGTGGAAACCCT
GATATCGGGATGAATGCCGCCAAGGAGAGCTGTGAGTCCATAGAGGAAGCACTTCATGGT
GCTGACATGGTTTTTGTCACGGCTGGAATGGGTGGGGGAACCGGAACTGGAGGTGCCCCT
GTAATTGCTGGAATCGCTA

Homology of Contig U35_20680 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g44420.1	453	1e-71	protein\|tubulin/FtsZ domain containing protein, putative, expressed
Brachypodium v1_2	Bradi5g09300.1	461	1e-107
Arabidopsis v10	AT2G36250.1	478	5e-52	\| Symbols: FTSZ2-1, ATFTSZ2-1 \| Tubulin/FtsZ family protein \| chr2:15197661-15199932 REVERSE LENGTH=478