barSeed - Barley Seed Development Database

Probe CUST_24651_PI390587928

Source Contig U35_20684

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_24651_PI390587928	Hv_44K_v2	GACCTGCTTTCATCTGTTGTGTTCTGATACAGTGTCTCAGTTATACTACTATGATATGAG	675	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK365056	3431	2e-24	3328 - 3387	100	60 / 60	minus	ABC05146
MLOC	AK376949	2571	2e-24	2506 - 2565	100	60 / 60	minus	None
MLOC	AK363025	2901	2e-24	2842 - 2901	100	60 / 60	plus	ABC14601
MLOC	MLOC_4096.1	1670	2e-24	466 - 525	100	60 / 60	plus	ABC14601
JLOC1	JLOC1_2494.1	1204	8e-25	465 - 524	100	60 / 60	plus
Harvest21	ABC14601	739	3e-25	676 - 735	100	60 / 60	plus	ABC14601
Harvest35	U35_20684	752	3e-25	676 - 735	100	60 / 60	plus

Contig Sequence (752 bp)

>U35_20684 752 Hv_44K_v2
CGCAGAATTGGAGAAAGAAAAAGAGGAAAGCCGTCCAAAGAATGCGAAGCCCAACAAAGA
AGAAGATGATAAAATGAGAACAACGGCAGCAAATGTTGCTGCTCGGCAGGCAGTTGGAGG
AAGTGATATGTTTTCAAAGTGGCAGCTGATGGCCGAACAAGCTAAGCAGAAGCGGGCACC
AGCTCCAAGACCATCCCATGTATCTGGAAAAGGATCGGCAGAACGCAGCGAGGCTTCAAA
GAGGAGCCATCTTGCGGCCTTTGGAACTGGAGGCACGGAAAGGCAAGGCAAGGGTTCATT
CGCAAATCGCCACTCGCATGGGCCACAGCGAACTGTTTCTGTGAAGGATGTAATCTGCGT
CCTGGAGAGGGAGCATCAGATGACGAAATCGCGGCTGATTTATCGGCTGTACGAGCGATT
GCCTGGAGAGCCCACCACAGATTAGGATAAAAATATAGTCATTTGTTTAGCTTCACCTAT
AGTGTGTAAATGGTGTGCCCATGCGGTGTGTGGTGGTAAGGTAAAATTGATGACAGTGCC
GGCTATAGTTGACATTACAGATCTGTTAACAGATAAGATGGTGAATAGCCACCAAAATGG
TCATACAAACCCAGTCTAGAAAGGGAGAGTTGTCATGGGAATAAGATTGTGCAGTGTGAG
TCTGTCGATGCACCTGACCTGCTTTCATCTGTTGTGTTCTGATACAGTGTCTCAGTTATA
CTACTATGATATGAGAAAAAAAAAAAAAAAAA

Homology of Contig U35_20684 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g43750.1	729	3e-65	protein\|transcription initiation factor, putative, expressed
Brachypodium v1_2	Bradi3g50457.1	795	4e-81
Arabidopsis v10	None