barSeed - Barley Seed Development Database

Probe CUST_24647_PI390587928

Source Contig U35_20688

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_24647_PI390587928	Hv_44K_v2	GACTGGACCTATTTTTCAGTTCAATTTTCTTCTTCTGAAATATATACGCTTCGTGGTGAA	918	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.962	1.862	1.156	0.826	0.345	0.391
Raw	612.695	910.403	497.933	565.390	80.819	101.634

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_6484.1	816	1e-22	624 - 682	98	59 / 60	plus
Harvest21	ABC13948	1011	3e-25	919 - 978	100	60 / 60	plus	ABC13948
Harvest35	U35_20688	1011	3e-25	919 - 978	100	60 / 60	plus

Contig Sequence (1011 bp)

>U35_20688 1011 Hv_44K_v2
CCCTCCTCCAGGTTGGTGATGAGAAGGTGCAAGGGTTGTATGTTGCGAAGCTTGTGCGCT
CCTTCTGTAGGTCGTCCTGTGACTCTGAAGATGAAGATATATTTGAATACATCGCCTCGA
TACTTGTGAATATCTCAAAGGTCGAAGCTGGACGGAGAATACTGATGGAACCTAAGAGAG
GTCTTCTAAAGCAGATTATAGGGCAATTTGATTCAACAAACCAACTTAGAAAGAAAGGGG
TTGCTGGCACCATCCGTAATTGTTGCTTTGAAGCTGATACCCAGATACAAAATTTGCTTT
CTATAGCAGAATATCTTTGGCCAGCTCTACTTTTGCCTGTAGCTGGAAAGAAGATCTACA
GCGAAGAAGATACTTCGAAAATGCCTCCCGAGCTTGCGAATGCACTTTCTCATGAACGAG
AATCTGTTGATGATTCTGAAATTCGTGAACGGGCACTCGAGGCTATTTATATGATCGTGA
TGCAGGATGATGGACGAAAGGCCTTTTGGTCAGTCAATGGGCCACGGATACTGCAGGTTG
GTTATGAAGACGAAGAGGACTTGAAAGTGATGGGAGCATATGAGTTGATTGGTTCTTTGC
TTGTTGGCAAGGGTGAAATTGAACAAGATCAAGAGCAAGGAGAAGATAAGCCTCAATGAC
GGGCTCAACTTTGTGCAATTTGTAGTTTGCCTTGTCTACTTGCTGCAACAAAAAGGGCTA
TATTGCTTCCAATCTTAAGAATGTTCTGTGGTATGGATCCAAATTTCTTGCAGTAACTGG
CTTGTTGTATCTCCTGGTTTCAGTTTTGTTGTCCACAGTCTTAATATATCTATGTGAGAG
CATCAAGATGTCCAGTTTTCACCACTTACTGGGGACACATTGATTTTGCGGCATGGCGTG
TATATGATCGATGTGGCCGACTGGACCTATTTTTCAGTTCAATTTTCTTCTTCTGAAATA
TATACGCTTCGTGGTGAAANTGTCAGAGCATCTGCAAAAAAAGGGGGGGCC

Homology of Contig U35_20688 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g26660.1	346	4e-120	protein\|expressed protein
Brachypodium v1_2	Bradi3g24960.1	344	5e-127
Arabidopsis v10	AT1G14300.2	377	5e-86	ARM repeat superfamily protein \| chr1:4882654-4884686 REVERSE LENGTH=377