barSeed - Barley Seed Development Database

Probe CUST_24637_PI390587928

Source Contig U35_18378

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_24637_PI390587928	Hv_44K_v2	AACTGTTGGTTGCTAATCTGCGTGAAACTCACCGAAATGGTTGTCTTCTTCTTTAAAAAA	577	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_76363.1	1916	3e-21	444 - 497	100	54 / 54	minus	ABC16765 ABC16766
JLOC1	JLOC1_50926.1	1916	2e-21	444 - 497	100	54 / 54	minus
Harvest21	ABC16766	631	6e-22	230 - 283	100	54 / 54	plus	ABC16766
Harvest35	U35_18378	648	3e-25	578 - 637	100	60 / 60	plus
Harvest35	U35_18377	842	6e-22	399 - 452	100	54 / 54	plus

Contig Sequence (648 bp)

>U35_18378 648 Hv_44K_v2
ACGGAGGCAGGCGGCGGCAGCAGGCGGCGCGCGCCTCCTGGATCGTGGACGACGCCACCG
GGCTGGCCGTGGCGGAGGTGAAGAGGAAGCTGACGGCGACGGGGGTTTCCCTCGGCGAGG
ACGTGCTCACGCTGGTGGTCGAGCCCAACGTGGACCACTCGCTCATCATGGGGCTCCTTG
TCGTGCATGGCCTCATAAACCACTCCATGTGAGCATTCGATCGCATCGTACGAGCTAGCA
GGGACAGGGTGTGATTTTCTTGTGAGATGCATGCATGCTCAGATTCATCCTGCTGCTGCA
GAGTGTAATTTCTTTTTCTTGCATTGTTGTTGTTTCTTTCTTCTTTCTTTGGAAACCTTG
TGGCGTGATTTGCTTAGGCGTGATCGATTTAAGGTTAGAAAGAATAAGTTTATGTTCCAT
CGATCATGTCCCGTACGGCCGTACGTATGGAAGGAAGGAAGGAAGGAAGGAGAAGGAGGC
CACCGTTCCATCCACGGAGGCAGGCGGTTAGGCCTGGGGGCTACGCGAGGAAGAAGACGC
TGGAGATTGTAGATGAACAGTTCCTTGATCTATTTTCAACTGTTGGTTGCTAATCTGCGT
GAAACTCACCGAAATGGTTGTCTTCTTCTTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_18378 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None