barSeed - Barley Seed Development Database

Probe CUST_24622_PI390587928

Source Contig U35_20696

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_24622_PI390587928	Hv_44K_v2	TACTACCTGCTCCATCTATATTTCAATGAAGGCTGTTGGCCAAGCATTCCCACAGCTGAA	455	GeneList: tan MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.316	0.496	1.377	2.228	0.900	0.970
Raw	26.877	66.817	162.723	417.679	59.480	70.404

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK369185	1271	2e-24	486 - 545	100	60 / 60	plus	ABC16572
MLOC	MLOC_1299.1	3385	2e-24	2640 - 2699	100	60 / 60	plus	ABC16572
MLOC	MLOC_1299.2	4033	2e-24	3288 - 3347	100	60 / 60	plus	ABC16572
JLOC1	JLOC1_797.2	2832	8e-25	1978 - 2037	100	60 / 60	plus
JLOC1	JLOC1_797.1	3785	8e-25	2947 - 3006	100	60 / 60	plus
Harvest21	ABC17193	612	3e-25	443 - 502	100	60 / 60	plus
Harvest35	U35_20696	625	3e-25	456 - 515	100	60 / 60	plus

Contig Sequence (625 bp)

>U35_20696 625 Hv_44K_v2
CTCACCACACAGAGGCTTCCGGAAAGCCCTAGCCAGATCGGCATGGCATCCCCGCCGCCG
TCGCCGCCGGACTGGGCCGGCCTCCCTGATGATGCTCTTCTTACAGTGTTCGGGCGCCTG
GGCGCGCCGGAGGTGCTCATGGGCGCCGGAGTCGTTTGCCGCAACTGGCTCCGCGTCGCC
ACCGGCGAGCCCGACCTGTGGCGCCGTGTTGACCTATCCGACTGCTTCGACCCCACCATT
GACATGGTGGCCATGGCGTGCGCGGCCGTCGACCGCGCCGACGGCCGCCTCGAGCACTTC
GCCGCCGATTGTTTCGTCACCGATGCGCTGCTCTTCTACATGGCCAAGAGAACTAATGGC
TTGAAAAGCCTGCGGCTAGTTAACTGCATGAAAGTCTCAGACAAAGGCTTGGTTGCTCTG
GGCAAGAGATCCCCTCATCTCGAGGAACTTGAGCTTACTACCTGCTCCATCTATATTTCA
ATGAAGGCTGTTGGCCAAGCATTCCCACAGCTGAAGCGGCTGCGCCTGAACAACCGGTGG
GTCAATGTCGAGTGTGAAGAACAGTTCGATAACCACCGTGCCCTCGACATCGCAAGCAAC
ATGCCTGAGCTACGTCACCTTCAGC

Homology of Contig U35_20696 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g21260.1	331	2e-89	protein\|OsFBL8 - F-box domain and LRR containing protein, expressed
Brachypodium v1_2	None
Arabidopsis v10	None