barSeed - Barley Seed Development Database

Probe CUST_24610_PI390587928

Source Contig U35_18389

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_24610_PI390587928	Hv_44K_v2	TTTATGGAGAATGTAGGCTGAGACCAGCGTAGTTCATGGAGAATGTATGTTGTGCGAATT	1385	GeneList: darkslateblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.724	1.950	1.187	0.734	0.269	0.267
Raw	5616.840	10291.910	5354.160	5283.400	657.774	722.450

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK374180	1858	2e-24	1638 - 1697	100	60 / 60	plus	ABC08917 ABC08919
MLOC	MLOC_14471.2	4337	2e-24	4013 - 4072	100	60 / 60	plus	ABC08917
MLOC	MLOC_14471.1	1118	2e-24	712 - 771	100	60 / 60	plus	ABC08917
JLOC1	JLOC1_9889.1	995	8e-25	712 - 771	100	60 / 60	plus
Harvest21	ABC08917	968	3e-25	190 - 249	100	60 / 60	minus	ABC08917
Harvest35	U35_18389	1634	3e-25	1502 - 1561	100	60 / 60	plus

Contig Sequence (1634 bp)

>U35_18389 1634 Hv_44K_v2
GAAGAGCGCCGCGGTGACCCCCGCGCCCTCCGACGGCGAGGAGAGCGCCGTCGTTCCCAG
CTCCGCTGCCAAGCGCCAGTCCGGCAGACATAAGAAGGACCCCGCCGCCGCCAGCCCCGG
CTCCACTGCCAAGCGCGCGGCCGGGAGGCCTAAGAAGGTCGCCGGCCCCGCCGAGGGCTC
AGCTATGGATCCCGCGAAGGGCGACATGGGGGAGGAGGAGAAGGGGGCGACCCCGAAGAA
GAAGGAGAAGGGGGCGACCCCCAAGAAGGGGGAGAAGGCGGCGACCCCGAAGAAGACGGA
GAAGAAGGGGGAGAAGGCGGCGACCCCGAAGAAGACGGAGAAGAAGGGGGAGAAGGCGGC
GACCCCGAAGAAGGCGGAGAAGAAGGGGGAGAAGGCGGCGACCCTGAAGAAGGCGGGGGA
GAAGGCGGCGATCCCGAAGAAGGCGGGGGAGAAGGCGGCGACCCCGAAGAAGGAGGAGGA
GAAGGCGGCGACCCCGAAGAAGACGGAGAAGAAGGGGGAGAAGGCGGCGACCCCGAAGAA
GGAGGAGAAGGCGGCGGCCCCGAAGAAGGAGGATGAGGAGAAGGCGACGGCCCCGAAGAA
GAAGGAGAAGGGGGAGAAGGCTGCTGCCAAGAAGAAAAAGGACAAGGGGGAGATTGCGGC
GTCCCTGGACAAGGAGGAGATGGGGGACACGCTGGCGGACCTGAAGAAGAAGAAGGAGAA
GGAGGAGATGGGGGACACGCTGGCCAACATGAAGAAGAAGAAGAAAGAGAAGGAGGAGAT
GGGGGACACGCTGGCCAACATGAGAAAGAGGAAGCACGGCGATCTGGAATCCCCAAAGGC
GGCGAAGAAACACAAGGGCAAGGCGGCAGGAGCGGCGCCGGCGGCAACCGAGCCCGGCAC
CTGCAGCTTCCCGATGGCGCGGGTGCGGGTGCTGATGCGGGACAAGGACGCCACCATCCG
ATCTAACACCGAGACCGTCTTCCTCGTCAACAAGGCCTCGGAGTTATTCTTGGAGGCATT
TGTGGAGGATGCTTATCAGAATGCCCTGAAGGGACGCAAAAAGTCAATTGCCTACGATAA
CCTTTCGGCGGGTGTGTGCAATGAGAAACGGTACAAGTTTCTATCAGATTTCGTGCCGCT
GAGGGTGACCGCTGGAGATGCACTCAAGGCTGTGGTGGAGCGGTCTTAGACAGAGGAGGT
GTCAGTCCTAGACCATGAGGGAGACACGCATGATCGCCATAGGTTCTCTTGTCGTGCGCT
AAGCTAGCCTGTGCTGTTTTGTAGGGAGGGAGACGGTGGAGGTAGGGTTGTCTGGGCTAC
TATGTTCTTCTATAGTAGGTTAGGTTGAGACCAGCGTAGTTTATGGAGAATGTATGTTGT
GCGAATTTATGGAGAATGTAGGCTGAGACCAGCGTAGTTCATGGAGAATGTATGTTGTGC
GAATTTATGGAGAATGTAGGCTGAGACCAGCGTAGTTCATGGAGAATGTATGTTGTGCGA
ATTTATGGAGAATGTAGGCTGAGACCAGCGTAGTTCATGGAGAATGTATGTTGTGCGAAT
TGGAGCGGCAACCCACCCACCCCTTGTGGCAATGCATGTTGATGTGTGTCTGGTCTGAAA
AAAAAAAAAAAAAA

Homology of Contig U35_18389 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None