barSeed - Barley Seed Development Database

Probe CUST_24609_PI390587928

Source Contig U35_44652

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_24609_PI390587928	Hv_44K_v2	TATTAGAGCTAGGTCAATTTTTTGCACGTTGCAACTCGTGTTGTTGATCCGTCTTGCGCC	505	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.769	1.540	1.937	0.830	0.734	0.654
Raw	16.625	23.242	24.963	16.254	3.419	3.423

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC25615	774	3e-25	506 - 565	100	60 / 60	minus	ABC25615
Harvest35	U35_44652	571	3e-25	506 - 565	100	60 / 60	minus

Contig Sequence (571 bp)

>U35_44652 571 Hv_44K_v2
TTTTTTTTTTTTTTTTTATTCTTTTTTTACTAAGTATATGCACCCAACGGCCTTATCCAG
AATCAGAAGCGGCCTGGGCACTCAATCCAGAGACGAGCCCGAAGAGGAGCGAGAGCCACA
GCCGCAGGGGCGGGATCCCGCGAGTGGCGGCGAGATCAGCAACGGGTGGGCAGCGCGGGA
GACCAGCGCAGGTGGCGGCGAGCTCCAGCGAGGGCGGCAACCGGCGGCTGCAATCCAGAG
TAGGGCGACGGCCAGTGGCGGCAGGAATCGACGGCGGGACGGGACAATAGCCGTGCTCGA
GCAGAAGATAATGGGGTGGGGCGATCCGATCCAGGCTTGAGCGAAGACAGCCACACCTGG
ACTCGATCCAGAGAAGGACCCACGGGCGGGCGTGCTGGCGACGGGATCCGACGAGACGGA
GGAGCCGAGCGTGGCATGACCTGCAGGGGGAAAAGAGCAGGCGTTGAGGGCTAGCAGCGA
CGAGCGACGGCCACGGAGGAGCGGCGGCGCAAGACGGATCAACAACACGAGTTGCAACGT
GCAAAAAATTGACCTAGCTCTAATACCATGT

Homology of Contig U35_44652 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None