- Probe CUST_24584_PI390587928
- Source Contig U35_48257
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_24584_PI390587928 | Hv_44K_v2 | GTCTCTATGTAACACTAGAATACAAGTCATTTTATGCACCCTGAAGGCTTGACTGAGAAA | 14 | GeneList: turquoise MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.466 | 1.496 | 1.077 | 0.894 | 0.384 | 0.404 |
| Raw | 1041.964 | 1681.193 | 1042.802 | 1372.969 | 206.407 | 234.552 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_44058.1 | 631 | 2e-24 | 547 - 606 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_44057.1 | 1345 | 2e-24 | 1281 - 1340 | 100 | 60 / 60 | plus | None |
| JLOC1 | JLOC1_28514.1 | 1434 | 8e-25 | 1292 - 1351 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_48257 | 394 | 3e-25 | 15 - 74 | 100 | 60 / 60 | minus |
Contig Sequence (394 bp)
>U35_48257 394 Hv_44K_v2 TTTTTTTTTTTTTTTTTCTCAGTCAAGCCTTCAGGGTGCATAAAATGACTTGTATTCTAG TGTTACATAGAGACAACTGCAGTGCAGTATAACAATCCCATCACTTGGCTTCCTCTTAGC TTCTCTTGCAGGTTCTAACAAGCACCGCAAATGGCACATATAAGACTACTAACCAAGGAA ACAGTCAATAGCTACCGCGCTACACCAAATACCAGCTCACCTAGTCATCTGGCCACTCAG TTCTAAACAAAAAAAAGTACTCCATGTTGCTCTAATCCAGATCTTTGCTAGTATCAAGGC AAGCCTTCCCACGAAGGCACCATTACAACGGCACACAGAGAAAAACCAAGAAAAATAAAA TGTTACTCTGCTACTCCAGATACCAGCTCAGCCT
Homology of Contig U35_48257 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |