barSeed - Barley Seed Development Database

Probe CUST_24577_PI390587928

Source Contig U35_50574

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_24577_PI390587928	Hv_44K_v2	ACTACACTGAGGCTGCCATGGATGAGATCAAGATCCTGAGGCAGATTGCCGACGGTGACC	243	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK371916	2059	2e-24	452 - 511	100	60 / 60	plus	ABC21023
MLOC	MLOC_8841.1	1414	2e-24	503 - 562	100	60 / 60	plus	None
JLOC1	JLOC1_5844.1	1398	8e-25	479 - 538	100	60 / 60	plus
Harvest21	ABC52802	303	3e-25	244 - 303	100	60 / 60	plus
Harvest35	U35_50574	303	3e-25	244 - 303	100	60 / 60	plus

Contig Sequence (303 bp)

>U35_50574 303 Hv_44K_v2
AGGCGGCGGCCGCCGCCGACGGGGACGGGGACGGGGACAGCAGCGTCTACACCTCCGAGG
ACGAGGGCACCGAGGACTACCGCCGCGGCGGCTACCACGCCGTCCGCCCCGGCGACACCT
TCAAGCAGGGCGCCTACGTCGTGCAGTCCAAGCTCGGCTGGGGCCACTTCTCCACCGTCT
GGCTCGCCTGGGACACCGCCCACTCCAGGTATGTGGCCCTGAAGGTGCAGAAGAGCGCAC
AGCACTACACTGAGGCTGCCATGGATGAGATCAAGATCCTGAGGCAGATTGCCGACGGTG
ACC

Homology of Contig U35_50574 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g53720.2	410	2e-53	protein\|SRPK4, putative, expressed
Brachypodium v1_2	Bradi1g08660.2	564	4e-53
Arabidopsis v10	None