barSeed - Barley Seed Development Database

Probe CUST_24575_PI390587928

Source Contig U35_50575

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_24575_PI390587928	Hv_44K_v2	CGCGGTGTTATTGAGAATGCCCGACAAATACTGAAGGTTATAGAGGAGTTTGGGTCATTT	353	GeneList: tan MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.405	0.722	1.252	1.722	0.769	0.940
Raw	31.178	92.541	133.348	303.651	45.563	60.565

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK250702.1	1334	2e-24	758 - 817	100	60 / 60	plus	None
MLOC	MLOC_19229.1	1014	2e-24	486 - 545	100	60 / 60	minus	None
JLOC1	JLOC1_13342.1	1083	8e-25	467 - 526	100	60 / 60	plus
Harvest21	ABC52804	518	3e-25	354 - 413	100	60 / 60	plus
Harvest35	U35_50575	518	3e-25	354 - 413	100	60 / 60	plus

Contig Sequence (518 bp)

>U35_50575 518 Hv_44K_v2
CTGATCATAAAGTCTCTGCCATGCTGGAAAGGGAGGCTGGATCTGCTTCTCCAAGTGATG
CTTCTGGTCTGAAGAGGAGGTGTGCTTGGGTGACTGCTAATACCGATCCATGTTATGTTG
CATTTCATGACGAAGAATGGGGAGTTCCAGTTCATGACGACAAGAAGTTGTTTGAGTTAC
TGGTGCTCTCGGGTTCACTGGCTGAACTTACTTGGCCAACAATTTTGAACAGGAGATCTA
TATTCAGGGAGGTTTTCATGGATTTTGACCCTTCATTGGTCTCTAAGTTAAGTGAGAGGA
AGATTATTGCACCTGGAAGTCCGAGCAGCTCCTTGTTATCTGAACAGAAATTGCGCGGTG
TTATTGAGAATGCCCGACAAATACTGAAGGTTATAGAGGAGTTTGGGTCATTTGATAAGT
ACTGCTGGAGCTTTGTGAACCACAGACCTATATTGAGCACATTCAGGTATCCCCGTCAGG
TTCCTGTCAAGACATCTAAAGCGGACGCAATAAGCAAA

Homology of Contig U35_50575 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g42290.1	384	2e-104	protein\|methyladenine glycosylase, putative, expressed
Brachypodium v1_2	Bradi5g14770.1	388	1e-109
Arabidopsis v10	AT5G57970.1	347	5e-79	DNA glycosylase superfamily protein \| chr5:23467316-23468910 FORWARD LENGTH=347