barSeed - Barley Seed Development Database

Probe CUST_24570_PI390587928

Source Contig U35_50579

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_24570_PI390587928	Hv_44K_v2	CATTTCTTGCTGATCCAAACTATGACCCTCCAGATGACATTGAGCCTCTACCTATATCAG	507	GeneList: black MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.265	0.173	0.473	2.284	2.301	4.454
Raw	5.285	3.202	16.094	121.299	43.006	91.978

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_13434.5	2472	2e-24	71 - 130	100	60 / 60	minus	ABC01278 ABC01281 ABC43458
MLOC	MLOC_13434.4	3672	2e-24	570 - 629	100	60 / 60	minus	ABC01278 ABC01281 ABC43458
JLOC1	JLOC1_9095.2	2603	8e-25	2339 - 2398	100	60 / 60	plus
JLOC1	JLOC1_9095.1	2607	8e-25	2343 - 2402	100	60 / 60	plus
Harvest21	ABC52811	573	3e-25	508 - 567	100	60 / 60	plus
Harvest35	U35_50579	573	3e-25	508 - 567	100	60 / 60	plus

Contig Sequence (573 bp)

>U35_50579 573 Hv_44K_v2
TTGATGCTGCCAGAGGCCTCGAGTACTTGCATGAGGTGGCCAATCCGCCGGTGGTATACC
GCGATCTCAAGGCATCAAATATTCTCTTGGACGGGAACTTCAGTGCAAAGTTGGCAGATT
TTGGACTTGCAAAGCTTGGTCCAGTCGGCGACAAAACTCATGTCACCACAAGGGTGATGG
GCACGTACGGGTACTGCGCTCCCGAGTACGCCATGAGTGGCAAGTTAACAAAGATGTCAG
ACATATATTGCTTTGGTGTAGTTCTCTTGGAGCTCATCACCGGGAGGCGAGCAATTGACA
CCACGAAACCGACTCGCGAGCAAATTCTTGTCCACTGGGCAGCACCACTCTTCAAGGATA
AGAAGAAGTTTACCAAGATGGCTGATCCACTGCTTGACAGCAAGTACCCCCTGAAAGGTC
TATACCAGGCACTTGCAATTTCATCAATGTGCCTACAAGAAGAAGCAATCAGTCGTCCAC
TAATCAGTGATGTGGTGACGGCCCTTACATTTCTTGCTGATCCAAACTATGACCCTCCAG
ATGACATTGAGCCTCTACCTATATCAGTTCCCG

Homology of Contig U35_50579 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g41950.1	485	3e-121	protein\|protein kinase, putative, expressed
Brachypodium v1_2	Bradi2g20880.1	556	3e-125
Arabidopsis v10	AT3G20530.1	386	5e-90	Protein kinase superfamily protein \| chr3:7166318-7167806 FORWARD LENGTH=386