- Probe CUST_24564_PI390587928
- Source Contig U35_48263
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_24564_PI390587928 | Hv_44K_v2 | TAGTGGGTCCCGATTCCGGAGGGTCCAAGAGGAAGAAACGACTTCTATTTGTACAAAAAA | 11 | GeneList: bisque4 MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.508 | 2.240 | 1.357 | 0.626 | 0.297 | 0.335 |
| Raw | 462.524 | 1096.847 | 565.455 | 409.347 | 66.510 | 84.758 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK355813 | 2001 | 9e-22 | 1894 - 1948 | 100 | 55 / 55 | plus | None |
| Harvest35 | U35_48263 | 351 | 3e-25 | 12 - 71 | 100 | 60 / 60 | minus |
Contig Sequence (351 bp)
>U35_48263 351 Hv_44K_v2 TTTTTTTTTTTTTTTTTGTACAAATAGAAGTCGTTTCTTCCTCTTGGACCCTCCGGAATC GGGACCCACTACCAATCATCGCACCCATCTAAACATGACAATCATTCATCACGGATCAAT CCATCCAACAAAGAAAATAAAATAAACAGACAAAAAAATACCACCAAAAATAACAAGGCC TAAGGACTAGCAAGAAGTGTTGTTCTTGCATTGGCTTGCTTCAGTTCAGTTGCTTTCCTA GTTCCCATCGTCCATCTCTCCAATCTTCTTTCGTGAGCAGTGAGCAGTGAGCAGTCCAAT GATGACCTCAGCCAGCCAATCCAAGGTTTCGATTCTAGCCCTATGGGAAGC
Homology of Contig U35_48263 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |