barSeed - Barley Seed Development Database

Probe CUST_24563_PI390587928

Source Contig U35_48264

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_24563_PI390587928	Hv_44K_v2	CAGCGTGCATATGTATGTAAATTATTATTAAGAAGGGACGACGATCGAATTAATTGACGA	16	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_38500.1	679	2e-24	13 - 72	100	60 / 60	minus	ABC01219 ABC01226 ABC01228 ABC01239 ABC49778
JLOC1	JLOC1_25041.1	675	8e-25	499 - 558	100	60 / 60	plus
Harvest21	ABC01226	1937	1e-23	1212 - 1272	98	60 / 61	plus	ABC01226
Harvest35	U35_48264	417	3e-25	17 - 76	100	60 / 60	minus
Harvest35	U35_13837	1328	4e-24	1227 - 1284	100	58 / 58	plus

Contig Sequence (417 bp)

>U35_48264 417 Hv_44K_v2
TTTTTTTTTTTTTTTTTCGTCAATTAATTCGATCGTCGTCCCTTCTTAATAATAATTTAC
ATACATATGCACGCTGGATTAAATGGCGTGCGTGGTACTGGTACAATGCAAAAGGTAGGA
ATTCAAGTTCAACCCATGGGAAGCGTCAGCGTGATGGGAGCTCGGGAAATCTCAGTGATG
GTTGACGAAGCGGCACTGCTTCCTGATCTCGCCCTCGCTGCCGTGCGGCATGGGCAGCTT
GCTGAGCTTGACGAGCGAGTCGGAGAAGTCCTCGTCCCAGAGCGTGCCGTTGTCGGCGTA
CTCGTGCACGTGCCCGCGCGCCTCCTTCTCCGTCAGCAGCTGCCAGTCGGAGTTGAAGGT
GACGATCCTCGCCAGGTTGTTGTGGTAGTAGCTGTTGTCCAGGAAGTCCTTGACCTT

Homology of Contig U35_48264 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None