barSeed - Barley Seed Development Database

Probe CUST_24561_PI390587928

Source Contig U35_48266

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_24561_PI390587928	Hv_44K_v2	ATGGGTGGGGTGTTTGTGGGGAGCTGCCTTGGATATGAGGAATTCCTCAAATCTAAAAAA	11	GeneList: cyan MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.173	1.553	1.124	0.766	0.435	0.326
Raw	78329.233	77260.933	55862.467	54849.067	12354.133	9577.777

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_76215.1	5879	2e-24	4860 - 4919	100	60 / 60	plus	ABC22487
MLOC	MLOC_76215.2	6154	2e-24	5135 - 5194	100	60 / 60	plus	ABC22487
JLOC1	JLOC1_50823.1	7154	8e-25	3616 - 3675	100	60 / 60	plus
Harvest35	U35_48266	482	3e-25	12 - 71	100	60 / 60	minus

Contig Sequence (482 bp)

>U35_48266 482 Hv_44K_v2
TTTTTTTTTTTTTTTTTAGATTTGAGGAATTCCTCATATCCAAGGCAGCTCCCCACAAAC
ACCCCACCCATATGACTATGCCCCCTTTTGAATCGACAGTAGATTGGGCTTCATAGCTAC
TTTCATTCTAAAGACGAATATTAGTCAATAGGCAGGCTTCTTTCAGTAGCAAACATATTC
ATTTTCACCGGGCTCCGCGCACCTTTGGTACTTCTGGAGGGCAAGCAGTTTTATAGTGAC
TTCTTTCTTAGGGTAGGGCGACGAATACTTCCAATTCCGGAAAGGTCATTGGGTCGCCTT
TGGAAGCTAAAGCGAAAGTTGTAGAAAGCCGGGAGAAAAAGCGAAAGCTTGCTCGAAACG
GCCTATACCCTAACCCTCGGAAGCGAAGACGCAAAGCGTCACTTTTTTCAAAAGGAAGGA
GTTTTTTCTGACTGAATCCATCCATAAAGCCGCCAAGGAAACGAAGTTCGTTCCCTTTCA
TC

Homology of Contig U35_48266 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None