barSeed - Barley Seed Development Database

Probe CUST_24543_PI390587928

Source Contig U35_48274

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_24543_PI390587928	Hv_44K_v2	TACTTGCTAGAAGGGGGTTGCTATATACACATTTGCTAGCTGAACTGTCTTGCAACATTT	23	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.374	1.616	1.235	0.624	0.438	0.486
Raw	24.896	45.303	30.657	26.117	4.949	6.504

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_58141.1	913	3e-21	459 - 518	97	58 / 60	minus	ABC49822
Harvest21	ABC49822	716	3e-25	24 - 83	100	60 / 60	minus	ABC49822
Harvest35	U35_48274	716	3e-25	24 - 83	100	60 / 60	minus

Contig Sequence (716 bp)

>U35_48274 716 Hv_44K_v2
GAACAAGGTGTAATTTGAAAAAAAAATGTTGCAAGACAGTTCAGCTAGCAAATGTGTATA
TAGCAACCCCCTTCTAGCAAGTAAGCCGCCAACAACGGCTTGGTACCCTTCAGCAGTCAT
CAGTGTATCATTATACGTTCATGTTGTACGCTGCTCAATGCACAATTCTAACAAGCAAGC
ACTATTAACATAATTTCATTGGGCTTGATTCCTTTGGGCTCACCGAGGGACCTACGAAGC
TTGCTAACTCTTCAATATCGTCCTCCAATTCTTCATCATTATTGTCGAAGGGAGCGTCGG
AGTCGGATGCTTGCCCACGGACGGCAAGCAACCATGGTACGCGGGTGCCGCGGCCGCCGA
GTTGACGCGTTGCCGAACGCCACCGCCTGCACCTGTCGACGACCCACCGAAGAACACGCC
ATTGTTTCCTCCTCCGCGACCGGCTGCCGTCGACGAGGAGCCGCCGAAGTTCAGTTGCCG
GGCCAAGGGTGGCGACGAGGAGCCGCCGAAGTTCAGTTGCCTTTTGATGAAACTAACCAT
TTTGTAAAGGGAAAAAGAAAAACAGGTACTCTTTTGTGCTTTCCTGAAGTTTGGGGCGCT
CATCTTTTTTGGTAAAAAAATAAAAACTAAGTTCGCACATGTTGGGACTCTTTTGGTCTA
GCGGTTTGACTGGCATTTCCGTAAGACGTCTTTTGCAGACAACAGTTCCCAATTTG

Homology of Contig U35_48274 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None