- Probe CUST_2453_PI390587928
- Source Contig U35_38262
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_2453_PI390587928 | Hv_44K_v2 | TCCAGAAATGCAATGCAAAAATACAAAATCATTTTCGGGAGGATGGCGGATGAGAATTGC | 483 | GeneList: skyblue MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.959 | 0.775 | 1.677 | 1.713 | 0.977 | 0.910 |
| Raw | 41.496 | 46.669 | 99.076 | 152.857 | 32.443 | 32.637 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK357263 | 2477 | 2e-24 | 1109 - 1168 | 100 | 60 / 60 | plus | ABC05296 ABC05297 |
| MLOC | MLOC_56945.1 | 2334 | 2e-24 | 1046 - 1105 | 100 | 60 / 60 | plus | ABC05296 ABC05297 |
| JLOC1 | JLOC1_36856.1 | 2401 | 8e-25 | 864 - 923 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC34153 | 546 | 3e-25 | 484 - 543 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC05296 | 2461 | 3e-25 | 1116 - 1175 | 100 | 60 / 60 | plus | ABC05296 |
| Harvest35 | U35_38262 | 546 | 3e-25 | 484 - 543 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_16395 | 2611 | 3e-25 | 1116 - 1175 | 100 | 60 / 60 | plus |
Contig Sequence (546 bp)
>U35_38262 546 Hv_44K_v2 GGTACCAAATGCATGTTGCCGAAATGGAGGCGCTCAGGGCTGGAATGCCTCCAGTTTATG TAAATCACAGTAATGTGGGTGGCACAACCATTAGGGATATCCATATGGAGAACTTCAGTG TTACTGTTGGAGGTCGTGATCTTATTCAAGATGTCACCTTAACGCTTGCTTTTGGAAGGC ACTATGGTCTTGTTGGAAGAAATGGTACTGGAAAGACTTCTCTTCTCAGAGCTATGGCTC AACATGCAATTGATGGAATTCCTAAGAACTGCCAGATATTGCACGTTGAACAAGAGGTCA CCGGTGATGACACAACAGCTTTGCAGAGGCAGAGTCCAAACAGAGCCTAGACAAGAGCAA GGGTGATGTTGACAAAGATACTATCAGCAAGAGGCTTGAGGAGATATATAAGAGGCTTGA ATTCATTGATGCAGATGCAGCAGAAGCTCGTGCGGCATCAATTCTGGCGGGTCTCAGTTT CACTCCAGAAATGCAATGCAAAAATACAAAATCATTTTCGGGAGGATGGCGGATGAGAAT TGCACT
Homology of Contig U35_38262 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os02g58020.1 | 723 | 2e-73 | protein|ABC transporter, ATP-binding protein, putative, expressed |
| Brachypodium v1_2 | Bradi3g56780.1 | 721 | 3e-76 | |
| Arabidopsis v10 | AT1G64550.1 | 715 | 4e-58 | | Symbols: ATGCN3, GCN3 | general control non-repressible 3 | chr1:23968850-23973369 FORWARD LENGTH=715 |