barSeed - Barley Seed Development Database

Probe CUST_24538_PI390587928

Source Contig U35_50592

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_24538_PI390587928	Hv_44K_v2	GTGAATGAATGAATAAGCAGCATGTCGCGTTCGTGGATGCAGAAGTGCACAAGTGCAAAA	246	GeneList: midnightblue MasterList: Pathogenesis_Function_Probe_Module

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.012	0.037	0.896	1.200	2.067	2.230
Raw	786.772	7003.323	156644.633	260461.333	184782.000	226080.333

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_65014.1	935	2e-24	204 - 263	100	60 / 60	minus	ABC02052 ABC02053
JLOC1	JLOC1_42746.1	845	8e-25	124 - 183	100	60 / 60	minus
Harvest21	ABC52833	306	3e-25	247 - 306	100	60 / 60	plus
Harvest21	ABC02053	639	3e-25	515 - 574	100	60 / 60	plus	ABC02053
Harvest21	ABC02052	453	3e-25	335 - 394	100	60 / 60	plus	ABC02052
Harvest35	U35_50592	306	3e-25	247 - 306	100	60 / 60	plus
Harvest35	U35_14944	420	3e-25	335 - 394	100	60 / 60	plus
Harvest35	U35_14943	634	3e-25	516 - 575	100	60 / 60	plus

Contig Sequence (306 bp)

>U35_50592 306 Hv_44K_v2
CTACGTGGCCTCGCAGACCTGCGGCGCCGTGCCGCTGCTCCCCATCGAGGTGATGAAGGA
CTGGTGCTGCCGGGAGCTGGCCGGCATCTCGTCCAACTGCCGCCGCTGGCGACCGAGTGC
CCTGCGGAGGTGAAGAGGGACTTCGCCAGAACGCTCGCCCTGCCCGGGCAGTGCAACCTG
CCGACCATCCATGGAGGCGCCTACTGCGTCTTCCCATGAACGCTAGTTAGTTCATTGGGT
CGTCGTGTGAATGAATGAATAAGCAGCATGTCGCGTTCGTGGATGCAGAAGTGCACAAGT
GCAAAA

Homology of Contig U35_50592 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None