barSeed - Barley Seed Development Database

Probe CUST_24536_PI390587928

Source Contig U35_50595

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_24536_PI390587928	Hv_44K_v2	ACAAATACCATTTGTTCATCCATCTATTTTGCAGCAGCTAGCTCAGCTTGAAGCGACGGC	257	GeneList: black MasterList: Hordein_Function_Probe_Module

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.010	0.010	0.150	2.603	5.415	7.635
Raw	4.394	4.883	148.646	3645.537	2773.620	4332.250

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC52836	583	3e-25	258 - 317	100	60 / 60	plus
Harvest35	U35_50595	583	3e-25	258 - 317	100	60 / 60	plus

Contig Sequence (583 bp)

>U35_50595 583 Hv_44K_v2
CAACCACAACCATACCCACAACAACCACAACCATTTCCACAACAACCCATCCCACAACAA
CCACAACCATACCCACAACAACCACAACCATTTTCACAACAGCCCATCCCACAACAACCA
CAACCATACCCACAACAACCCTTTCCGCAACAACCACCATTTTGGCAACAACAACCAATT
ATATCGCAGCAACAACCATGTACACCACAACAAACACCACTCCCACAAGGACAACAAGAT
CAAATGCTTGTGCAAGTACAAATACCATTTGTTCATCCATCTATTTTGCAGCAGCTAGCT
CAGCTTGAAGCGACGGCTTCCATTGCGCTGCGTACCCTACCAATGATGTGCAGTGTTAAT
GTGCCGTTCTACCGCATACTTCCATTCGGCATTGACACGAGAGTTGGTGTCTAATGATAA
GAAAAGGTCTCTATAAATATATAGTTAAATCACCGTTGTTTAATCGAGGTATATGTCGAT
GTAGCGGTGACAAATAAAGTGTCACACAACCTTATGTGTGACCGACCCAGACTTGATGTT
TAAATTCTGGAATAAAATATAAATAAAGTTTTATCTGGACAAT

Homology of Contig U35_50595 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None