barSeed - Barley Seed Development Database

Probe CUST_24535_PI390587928

Source Contig U35_50596

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_24535_PI390587928	Hv_44K_v2	GCGTTTATTAACCCCCAAACTTTATGATGCCTATGGTTCAGCAAGGACAACAACCACAAC	464	GeneList: darkorange MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.730	0.862	1.913	1.772	0.715	0.803
Raw	332.579	630.214	1194.071	1780.671	255.819	308.838

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC52837	654	3e-25	465 - 524	100	60 / 60	plus
Harvest35	U35_50596	654	3e-25	465 - 524	100	60 / 60	plus

Contig Sequence (654 bp)

>U35_50596 654 Hv_44K_v2
GAAGAGCGCAGAAGAAGTCGGAAAGGGAGATGGAGTTGAAGGAGAAGTTTGAAAAGAACC
TTCAAGAGGCAGCAGATAAGTATCAAAACACCAACTTGTATCTGAAGAACTTAGATGATA
CTGTTGATGATGAAAAGTTGCGAGAACTTTTTGCTGAGTTTGGAACTATTACTTCCTGCA
AGGTTATGCGTGATTCCAATGGTGCAAGCAGAGGTTCTGGATTTGTTGCTTTTAAATCTG
CTGATGATGCTTCCCGAGCTCTTGCTGAAATGAACAACAAGATGGTTGGCAATAAACCAC
TTTATGTTGCACTCGCACAGCGCAAGGAAGACAGGAAAGCTAGGCTGCAGGCACAGTTTT
CACAAATGCGTCCTGTTCCAATGGCTCAAACTGTTGGTCCTCGTATGCAAATGTTACCTC
CTGGTGTTCCGGTTGGTCAGCAAATGTTTTATGGCCAGCCACCAGCGTTTATTAACCCCC
AAACTTTATGATGCCTATGGTTCAGCAAGGACAACAACCACAACGCCCAGCTGGTAGGCG
AGCTGGTGCTGGGGGAATGCAGCAATCCATGCAGATGGGTCAGCAGCAGATGATGGGTAG
GGGTGGTGGTCGTGGTTACCGCTATCCAACTGGGCGTGGCATGCCTGATCCTGC

Homology of Contig U35_50596 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g02700.1	663	2e-91	protein\|polyadenylate-binding protein, putative, expressed
Brachypodium v1_2	Bradi4g08430.1	654	1e-95
Arabidopsis v10	AT1G49760.1	671	7e-71	\| Symbols: PAB8, PABP8 \| poly(A) binding protein 8 \| chr1:18416740-18419753 FORWARD LENGTH=671