- Probe CUST_24529_PI390587928
- Source Contig U35_48285
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_24529_PI390587928 | Hv_44K_v2 | CTGCACTATATGCTCCTGAATTGAAATAAGGTATCATTCACAATGCTCAGTATGCTTTTA | 81 | GeneList: green MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.001 | 1.442 | 1.355 | 1.050 | 0.288 | 0.478 |
| Raw | 28.199 | 62.694 | 52.290 | 64.446 | 5.193 | 11.211 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK369460 | 3911 | 2e-24 | 141 - 200 | 100 | 60 / 60 | plus | ABC07244 ABC07245 ABC07246 ABC49860 |
| MLOC | MLOC_4057.1 | 2185 | 2e-24 | 1104 - 1163 | 100 | 60 / 60 | minus | ABC07244 ABC07245 ABC07246 ABC49860 |
| JLOC1 | JLOC1_2464.2 | 1105 | 8e-25 | 728 - 787 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC49860 | 312 | 3e-25 | 82 - 141 | 100 | 60 / 60 | minus | ABC49860 |
| Harvest35 | U35_48285 | 312 | 3e-25 | 82 - 141 | 100 | 60 / 60 | minus |
Contig Sequence (312 bp)
>U35_48285 312 Hv_44K_v2 CGGTACTTTGGGAGGTATTTAAATGAACCAGATTGTATACATATATCCAACATAATTTGT GGTGATATATAACAAACTTTATAAAAGCATACTGAGCATTGTGAATGATACCTTATTTCA ATTCAGGAGCATATAGTGCAGGGCAAGGTGACACGGTATGATCAGGCAAGCCACTTATGA ACTCGTTAGCAGCCTCAAGACAGCCATGCAGCATTTTCTTCTCTAACCTTACAAGTCTAG TAGCAACTTCTTTCTTTGGTTCCAAACTGCCATCGGCCAACATTGCTTCATCCTCATCCA AATTAGTCGGAT
Homology of Contig U35_48285 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |