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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_24526_PI390587928Hv_44K_v2TGAACACGATCTCTTGAGAAGCGCTCTCAAAAGGTTAACGAGGAGAACTACATGTGCAGT0GeneList: turquoise
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 1.1351.3471.4800.9510.4890.448
Raw 140.563253.144250.760234.22544.73344.767



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
Harvest21ABC498626953e-251 - 6010060 / 60minusABC49862
Harvest35U35_482886953e-251 - 6010060 / 60minus



Contig Sequence (695 bp)

>U35_48288 695 Hv_44K_v2
ACTGCACATGTAGTTCTCCTCGTTAACCTTTTGAGAGCGCTTCTCAAGAGATCGTGTTCA
TTTCAAACTTGATCCACCAACACTTAACACGCCAGATTTCCGTATAGAGAACCCATTAGT
TGAGACCGTATAAATCATATCTCTCTTCTTGGTTTGTAATAGTTTTCTGACTATTCGTAA
GGAGCTCACATTCTGACTGTGACTGCTTCTAAAATTCTTGTAGTATATTTTTCTTTTCCA
TGGAAGAATACGTGGGAAGGTCTTCACATAACTAGTTCCCACAGATCCTTTCCTCTGTGG
TTGTTGCCCACTGAGTGTCCACACGTGGGATGAAGTACCCATATTATTTGTCTGAAGAGC
TTTATGAGGTCTCTCCTTTAAACCACTGATACTGTTATTCGAGGATGCAATTTGTACACC
TTTATTCTCACCTGAATTTAAGCTCTCAGCAGGTATAATCTCTTTCGTATTCTGACCATC
AGAGGAAGATGAACTCAAAATAATCTGATTTTTCCGCTTCTTGAAATATAAATCAGAGGC
TGTGGGTGGCTGCAGTGATAAAACCTTATCCATAGAACTTTTAGTCAGGTCATCAGGGCA
CGGCCTCTGTGCAGCAACCAATTGATTTGATCTCGGTCTAACATAAACCACTTTACTAGC
ATCTGAAGGTTCAGGTGTTTGTGCACTTCTAATGC



Homology of Contig U35_48288 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7LOC_Os06g43120.118918e-88protein|zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
Brachypodium v1_2Bradi1g30260.120276e-95
Arabidopsis v10None