barSeed - Barley Seed Development Database

Probe CUST_24525_PI390587928

Source Contig U35_48291

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_24525_PI390587928	Hv_44K_v2	TCGTAGGACTATCTGCTGATGTGATCTATTGTTATGGCAGTTACCATCCTGATTCTGTTG	306	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK252537.1	1783	2e-24	1670 - 1729	100	60 / 60	plus	ABC11316 ABC11317 ABC49874
MLOC	MLOC_57883.4	1232	2e-24	356 - 415	100	60 / 60	plus	ABC11316 ABC11317 ABC49874
Harvest21	ABC49874	681	3e-25	307 - 366	100	60 / 60	minus	ABC49874
Harvest35	U35_48291	681	3e-25	307 - 366	100	60 / 60	minus

Contig Sequence (681 bp)

>U35_48291 681 Hv_44K_v2
AAATCTTAGACAAGAGGAACAGACCATTTAAACTCTTCTGATTGCTGGAGCTACAAATCA
CTAAGCACTTGGACATGGTTGAATTTCAACAGTTATACCAAGCCTCTTCCTGATTCATTT
ACGATAGCACTTTCTAACAGCCTAACATAATCTAACATATCAAGACTCCAACCAATCTGC
GGAGCACCTTCATGTTTATTTTTGGAATTCTGCAGCCAAGCTGTTGCCAATATCGGCATC
AAATCTTTAACTCCGAGAGAGCAAATTCGGCAACTATCATTTCTATATCAAACAGCAGAT
CACATACAACAGAATCAGGATGGTAACTGCCATAACAATAGATCACATCAGCAGATAGTC
CTACGATAAACAATATACTTCTATTGACAATAAATTGCTCGTAAGCAAGGTTCCTTCCCA
TCACAGCATGAAGTGAAAGGACCCCTGTATTCGAGAATAGCTTGCACTCATATGTGAACA
AATAAAACTGAACTCACCATGAAAAACATGGATGCAATGCACCTCATTGACAACCACTCA
TTCTGGCCCAATCCACAAACTGCATTCCTCCATAGACGTTATTTGCAAAGCGCACGCTGA
CAGTGAATGCCAAAGAAGCAGCCGGGACACGCTTGCCAAGAGGCGAAGCCTCAACCAAGC
GCTCAAGCCCATTAATTACCT

Homology of Contig U35_48291 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None