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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_24523_PI390587928Hv_44K_v2TGCAGAAAGGCCATCCACGTTTTTCTGCTGAAAACCTGGAGAAGAACAAGCAACTTTATC428GeneList: darkturquoise
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 0.2570.4361.2262.1191.0811.279
Raw 298.324765.1581955.8135365.533952.4831228.568



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCMLOC_75225.114883e-22413 - 46810056 / 56minus ABC04238 ABC49892
JLOC1JLOC1_50177.115261e-22914 - 96910056 / 56plus
Harvest21ABC498926893e-25429 - 48810060 / 60minusABC49892
Harvest21ABC0423814045e-23810 - 86510056 / 56plusABC04238
Harvest35U35_482946893e-25429 - 48810060 / 60minus
Harvest35U35_1577314115e-23810 - 86510056 / 56plus



Contig Sequence (689 bp)

>U35_48294 689 Hv_44K_v2
ATAAATTTACACGGCACGTGGAGACAGTGCAATTGTTCTTATTCACGGGACAATTCACAA
GATGAAGATACAGGGAGCACCATTCATCACAGTAGCAGATATCATGGCATGTTTTGCTCG
CACATATCACTGTCTCCACAATCTTTTTTAGTTTCACTTCTTCGGCGTATCTGCATAATT
CCAGGTGAATTTCGCAAATGAAGTATATTGCCTTCCACCGGCCACATCTTCTTCGCGTAT
CTCATTGCTAATCTCTTTGAGGTCATCTTCTGTGAGCTTCACCTTTAAGGAGTCAATGTT
GGAGTCTAGATTCTTGATCTTAGTTGTCCCTGGTATCGGAACCACATCATCCCCTTGATG
CAGAACCCAGGCTAAAGCTAGCTGAGCAGGGCTGCAATGGTGCTTCTTGGCCAGTTCTTC
CATTTTCAGATAAAGTTGCTTGTTCTTCTCCAGGTTTTCAGCAGAAAAACGTGGATGGCC
TTTCTGCAGAGAGGCACAATCTCGGGCTCGATGTCGCGTGCCCACAGAGACCACTCCATC
TGCACAGCAGAGATGGGGTGCACAGCGTGAGCACGCCTGATGGTGTCGGNGCTCGCCTCC
GATAACCCAATGTACTTGACCTTCCNCTCCTCCACAAGCTTCTTGAGCTCACCAATCGTG
TCCTCGATGGGGATGNGTGGTGTCGATGC



Homology of Contig U35_48294 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7LOC_Os01g43090.13452e-77protein|oxidoreductase, aldo/keto reductase family protein, putative, expressed
Brachypodium v1_2Bradi2g43690.13432e-78
Arabidopsis v10None