barSeed - Barley Seed Development Database

Probe CUST_24522_PI390587928

Source Contig U35_48295

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_24522_PI390587928	Hv_44K_v2	GATGGGTTTATGATTTTGATAGATCTGTATCTGTCCTGTACTCCCTTAGTCCTAAAATAA	10	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_57293.1	1710	2e-24	371 - 430	100	60 / 60	minus	ABC26584 ABC49894
JLOC1	JLOC1_37111.1	1437	8e-25	125 - 184	100	60 / 60	minus
Harvest21	ABC49894	508	3e-25	11 - 70	100	60 / 60	minus	ABC49894
Harvest21	ABC27172	526	3e-25	432 - 491	100	60 / 60	plus
Harvest21	ABC26584	559	3e-25	475 - 534	100	60 / 60	plus	ABC26584
Harvest35	U35_48295	508	3e-25	11 - 70	100	60 / 60	minus
Harvest35	U35_28352	526	3e-25	432 - 491	100	60 / 60	plus
Harvest35	U35_21956	559	1e-24	476 - 534	100	59 / 59	plus

Contig Sequence (508 bp)

>U35_48295 508 Hv_44K_v2
TTTAGAATATTTATTTTAGGACTAAGGGAGTACAGGACAGATACAGATCTATCAAAATCA
TAAACCCATCGCAAACCCTGGGTCAACAAATCAAGGAACAGATCGAGTCTGAATGACATT
TCAGACATTCAAATTTCCTGCCTCTGCAACGCCATCCAGCGCAATGGCATCAACTGAGAG
AAGCCACGGATCAGGGGAATAGCAGAGCGGCTTCAGTTGCTGGAGTTGGGTCCGTAGCAC
GCGGCGCGGACGGGGTTCCAGATCGGTTCTGGGGCTGATGGCGTAGGGGATGTTGACGCC
GCACTTGCTGGGGATGCCGGCGACGAGGTCGGGCTTGATGCCGCCCATGCCGCTCGTCTG
CTGCTTGAGGCAGGTGCAGGTGGCTTGGCGGTCGGCGGGGGTGGCAGCCGCCGCGTTAAG
GCTACGCACGCCCGTGCAGCAGCCCCCGCCAGGTGCACGCTCCCTGCCCATAGCGTAACC
GATACACGGCGCCAGGTAGCCCTCGTGC

Homology of Contig U35_48295 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None