- Probe CUST_24518_PI390587928
- Source Contig U35_7200
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_24518_PI390587928 | Hv_44K_v2 | CGAATGTGATGTATTACTCTGCCGTTGTGACTAGAAATAAAACCTGATTCAAAGGAAAAA | 432 | GeneList: orange MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.434 | 1.290 | 2.475 | 2.542 | 0.914 | 0.533 |
| Raw | 3.276 | 23.901 | 39.084 | 57.527 | 7.532 | 3.417 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_67638.1 | 546 | 9e-22 | 492 - 546 | 100 | 55 / 55 | plus | ABC09922 ABC09923 ABC14625 ABC22075 |
| JLOC1 | JLOC1_44679.1 | 492 | 4e-23 | 436 - 492 | 100 | 57 / 57 | plus | |
| Harvest21 | ABC14625 | 504 | 3e-25 | 433 - 492 | 100 | 60 / 60 | plus | ABC14625 |
| Harvest35 | U35_7200 | 504 | 3e-25 | 433 - 492 | 100 | 60 / 60 | plus |
Contig Sequence (504 bp)
>U35_7200 504 Hv_44K_v2 ACAGTTCAAAGAAAAAGAAGAAGAAGAGCCATGGAGCACTCGTACAGCAACAGCGGCATC AGCAACTACAGCAGCACAAAGGAGAAGAGGCCACCGCTGAAGAGGGGGCAGCTGAAGCGG CAGATTGTGAGGACCATCAGCAACCTCATGGCGCCGAGGAACGACGGCGCGGGCGCAGAC AAGAGGGCGTCAGGTGGCGCCGGCTTCGGCACCTACAACTGAACCTCTACAAACCACATC GATCTTCAGTCAAGGCTCTACACTAGGGCGGTACTAGTGCAAGAAATGGTTCTGCCTACT GTACATGTTAACTTCCCCCCTTTCCTTCAGAACTTCCTTGGGTCCTTATTAGCTGAGAGA CCGCTTAATACTAGGGTTTTCGTTTGTTTTTATGGATTGTATAACAAGGAATAGACTGGT TATGTAAATTTTCGAATGTGATGTATTACTCTGCCGTTGTGACTAGAAATAAAACCTGAT TCAAAGGAAAAAAAAAAAAAAAAA
Homology of Contig U35_7200 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |