barSeed - Barley Seed Development Database

Probe CUST_24516_PI390587928

Source Contig U35_7202

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_24516_PI390587928	Hv_44K_v2	GGTGATAGTTCTCTGACTGAATTTCATGTCATGGTTAATTGTTTTGTTTGTTGGGTGAAT	954	GeneList: darkslateblue MasterList: Inositol_phosphorylase_phosphatase_and_kinase_Function_Probe_Module

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.472	1.576	1.172	0.704	0.241	0.261
Raw	543.551	896.896	590.552	551.824	68.253	79.463

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_37906.1	1797	8e-25	1613 - 1672	100	60 / 60	plus
Harvest21	ABC18940	1035	2e-22	955 - 1009	100	55 / 55	plus	ABC18940
Harvest35	U35_7202	1060	3e-25	955 - 1014	100	60 / 60	plus

Contig Sequence (1060 bp)

>U35_7202 1060 Hv_44K_v2
TTTCTTACTTGTCGGAAGCATGCAGAGCGTGTTATACTTCTTGTGGAAATGTTGCAGGAT
TCTGGTTTCCCATGCTTTAAAGGTGGTAATCGCACTATTCTGAACTTGAGGAAGAGGTTC
CACTTGAGTCTCACTGAAGAGCAATGTGTATCACTGGTGCTCTCATTGATCAGTAGCAGC
ATGGATGCCTGGCGTACTCGGCAGTATGATTACTACCAGAGAGTATTGAATGGGATTTTA
TGATGTACTCCAGGGGCGCTTAGCACTTGTCTCGTTCAGAAACCAATTTGCTCATATCCT
CAGAGCAAATCTTTGGAACAAACAGATCAGTTTGGGGCTGATCTAGCCTGCTGCTATTCC
CACCATGATTGGCATGAGTGGAACCAGGTAATGGGGCAATGTGTTTTGCATCTTGCATGC
CGGAGTCTCCCGTGGAACCCAAGCGGTGCGTGCATTGTGCTCGTGTATTATTTCACACCA
TATGGAGATGGTTGAGAAAGTGTATAGTCATCGGCAGTTAGCTAGTTAGGGCTTCACACT
AGGAGGTTTGCTACTGGTGAAGCTGTTAAGCGTATTGGAATTTGGAACCCGAGCTGGCGG
TGCTGTACAGGCAGTAGATTTGCTTAGCTTGGGCAGGGGTTTAGGGGAGGACCGAGCCAT
ACATGAAGTGAACAAGTGTAAATTAAGGACGCATGGAAGCTGGGAGTCACCTGGGGCAGC
AGCAAGGGTTGTGTTTGAGCGATTCTGTGACATCCCAATATAGCATCGAACTAGACGATG
GCAATGTGCATTGTAAATTACCATTACTGTACAGGGCCCATACAATAGGAGCTCATTGTC
CCGTTTTTTCAGACTTTCGTTTTATTCACCAATAGTACTAGAGTTGGCGCCAGAAGTTGC
ACGTAAGTGATGCTTAGTGGAAGGAGCAGTTCATCTTGAAATTCCTTCGTCTTTGGTGAT
AGTTCTCTGACTGAATTTCATGTCATGGTTAATTGTTTTGTTTGTTGGGTGAATTACATT
TTTCTCCTGATAAAGGGTGTTTTATAACNTAAAAAAAAAA

Homology of Contig U35_7202 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None