barSeed - Barley Seed Development Database

Probe CUST_24511_PI390587928

Source Contig U35_7207

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_24511_PI390587928	Hv_44K_v2	ATGTCCACATGCAACCGCAACTTCTAGACTTGCGTGACTACAAGAGATGCTAGCTAAGAA	659	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_67954.2	1504	2e-24	1247 - 1306	100	60 / 60	plus	ABC15214
MLOC	MLOC_67954.3	1893	2e-24	1636 - 1695	100	60 / 60	plus	ABC15214
MLOC	MLOC_67954.1	1740	2e-24	1319 - 1378	100	60 / 60	plus	ABC15214
JLOC1	JLOC1_44919.3	1666	8e-25	1196 - 1255	100	60 / 60	plus
JLOC1	JLOC1_44919.2	2149	8e-25	1679 - 1738	100	60 / 60	plus
JLOC1	JLOC1_44919.1	1674	8e-25	1204 - 1263	100	60 / 60	plus
Harvest21	ABC15214	819	3e-25	660 - 719	100	60 / 60	plus	ABC15214
Harvest35	U35_7207	819	3e-25	660 - 719	100	60 / 60	plus

Contig Sequence (819 bp)

>U35_7207 819 Hv_44K_v2
GCCTCGACGTCCAGATTGGGTTGTTCAAGAAAGTTCTCGCCGTGCTTGGCTCCACGGACC
AAGAGAGGAAGGCGGTAATGGCGAGCTCGCTGTTCCTGGTGGGGGAGATCGGCGCCAACG
ACTACATCCAGCCCTTGTTCCAGAACAAGACACTCGAATGGGTCAGGCCCCTCGTGCCCC
GGGTCATCAGCTCCATCGCTCTGTCCATCGAGGCTCTAATCAAGCTGGGCGCCAAGACCA
TGTATGTGCCAGGCGTGTTCCCCATGGGGTGCACCCCGCTGTTCCTCGGCACCTTTTCCG
GCGACGGCCGCGACCCTGTCACGGGCTGCCTGCGGTCTCACAACGACCTCACCCTCGTTC
ACAACCACATGCTGAAATCGAAGCTCGACGAGCTCCGCCGCGACCACCCTGGCGTTTCCA
TCATTTACGTCGACTACTATGACGAGGTGCTCAGCCTCATCACCAAGCCGCTGGAGAATG
GGTTTGCAATGGAGACGTTGCTGGACGCGTGTTACCCCGTCTTCGTTCCTCGAAGGGAGG
CGGTGCGGTGCCCGGACCCGTTGAGGTACGTGTGGTGGGACGGTGTGCACTTGACGGAGG
CGGCGTACAAGATCATGGCACGCGGGATACTTGACGGCCCGTTTGCTGTGCCGTCCATCA
TGTCCACATGCAACCGCAACTTCTAGACTTGCGTGACTACAAGAGATGCTAGCTAAGAAC
CCGTGCGTTGCAACAGGAGAAAAAAAATCACCATCTTCAATGACGATGACCACATTATAT
TCATATTTCATCACATGATTTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_7207 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g44780.1	392	1e-77	protein\|GDSL-like lipase/acylhydrolase, putative, expressed
Brachypodium v1_2	Bradi1g19840.1	388	3e-78
Arabidopsis v10	None