barSeed - Barley Seed Development Database

Probe CUST_24510_PI390587928

Source Contig U35_7208

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_24510_PI390587928	Hv_44K_v2	TCGAGTATCAGTAGAATGTACTGTACTCATGAATGACCACGGCAGTTGCACTTCAAAAAA	723	GeneList: darkorange2 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.286	1.083	1.419	0.933	0.434	0.282
Raw	94.606	125.767	142.165	153.735	23.637	17.033

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_3688.1	967	9e-22	83 - 137	100	55 / 55	minus	ABC17571
JLOC1	JLOC1_2219.1	895	5e-22	755 - 809	100	55 / 55	plus
Harvest35	U35_7208	794	3e-25	724 - 783	100	60 / 60	plus

Contig Sequence (794 bp)

>U35_7208 794 Hv_44K_v2
GGGCTGCAGGTGGCACTGTTGCCCCCGTGCTGCTCTGCTCGCTTTCCCCTTCACTGCTCA
CTCTGCTCGGCACTCTCCTCCTCTGCTCACACTCGGTCTCTCTGTAGCGGAGCTGCGCAA
TGGCGGCGTCCAGGGCGCTGATGCTGGCCGTGGCCGTGGCCGCGGTGGGGTTCTCCGGCG
CGACGGACCACATCGTGGGCGCCAACCGCGGATGGAACCCAAACATCAACTACTCCAGCT
GGTCCGCCAACCAGACCTTCTTCGCTGGCGACCTCATCTCGTTCAGGTACCAGAAGGGGA
CGCACAACGTGTTCGCGGTGAACGAGACCGGGTACGACAACTGCACCATGGCCGGGGTCA
CCGGCAACTGGACCTCCGGCAAGGACTTCATCCCGCTCCCGGGCCCCGGTCGCTACTTCT
TCATCTGCGGCAACGGCTTCTGCCAGGCCGGCATGAAGGTCGCCATCACCGTCCACTGGT
CCGATATCGGACCACAGATCTACCCGCCGCCGGCCCCCGCCGCCTCCTCCTCCCCCTTCG
CCGCAGGGGCGTGGCCGCCAGCGACGCTCACTGCCGCGCTAGGAGCTGCTGCCATTCTTC
TCCTTTACTAGTTACTAGAGTATGATCTGCGGCAATTGACCGGGACATGGTCTCTAATAT
AGTCTAATTGGGGCACATTTACCTAGCTTAGCTTTCCTCATGTAATGTATGCACGTCTGC
ATTTCGAGTATCAGTAGAATGTACTGTACTCATGAATGACCACGGCAGTTGCACTTCAAA
AAAAAAAAAAAAAA

Homology of Contig U35_7208 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g38540.1	169	2e-60	protein\|plastocyanin-like domain containing protein, putative, expressed
Brachypodium v1_2	Bradi4g37700.1	169	2e-62
Arabidopsis v10	None