barSeed - Barley Seed Development Database

Probe CUST_2450_PI390587928

Source Contig U35_2017

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_2450_PI390587928	Hv_44K_v2	CAGCTTTCTTGCATAATCCACGGCTTTTAATTTACAAAATCAGATCCATCAGCAATCTTT	1445	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.219	1.934	1.043	0.906	0.491	0.621
Raw	1732.110	2422.684	1112.694	1563.758	288.772	397.683

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_67295.3	1494	2e-24	1352 - 1411	100	60 / 60	plus	ABC05187 ABC05188 ABC37140
JLOC1	JLOC1_44423.1	1473	8e-25	1350 - 1409	100	60 / 60	plus
Harvest21	ABC05187	1546	3e-25	1446 - 1505	100	60 / 60	plus	ABC05187
Harvest35	U35_2017	1546	3e-25	1446 - 1505	100	60 / 60	plus

Contig Sequence (1546 bp)

>U35_2017 1546 Hv_44K_v2
CAATCATCAACCCTAATTCGCAGCCTGGGCGCCACCGCCTCCTCGACCCCCTTTCCCTCG
AAACCCACCTAAAATCCTAGCCCTGCCGGCCGCCATGGCGTCGGCGGGCGAAGCGAGCGC
GGCGGCGGAAGCCACGGAGGGGAAGAACTGGCGGCGGAAGGGGAAGCACGAGAAGGAGAA
GCCGTGGGACGATGACCCCACCATCGACCGCTGGACGGTGGAGAAGTTCGACCCCTCCTG
GAACGAGGGCGGCCTGCTGGAAGTCAGCTCCTTCTCCACCCTCTTCCCCCAGTACCGAGA
GAAGTATCTGCAGGAGACGTGGCCGATCGTGAAGGGCGCGCTGAAGGAGTTTGGAGTCTC
ATGCGAGCTCAATCTGGTGGAGGGATCCATGACGGTTACCACCACCAGGAAGACCAAGGA
TCCCTACATTATTCTCAAGGCCAGGGACCTGATAAAACTCTTGTCACGAAGTGTCCCTGC
ACCCCAAGCAATTAAAGTGCTCAATGATGAGATGAACTGTGATATTATCAAGATTGGTAG
CATCATAAGAAACAAGGAAAGATTTGTCAAAAGGAGAGAGCGCCTTTTAGGCCCTAACCT
GTCCACCCTTAAGGCTATTGAGATTTTAACTGGCTGCTACATCTTAGTTCAGGGAAATAC
TGTTGCTGCCATGGGTTCCTTTAAGGGACTGAAACAAGTCCGGAGGATTGTAGAGGATTG
CATAAAGAACATAAAGCATCCAGTATACCACATTAAGGAACTCTTAATTAAACGTGAGCT
GGCTAAAAATCCTGCCCTAGCCACTGAAAGTTGGGACAGGTTTCTCCCGAACTTTAAGAA
AAAGAATGTCAAGCAAAAGAAGCCCAATACCAAGGAGAAGAAACAATACACACCCTTTCC
GCCACCTCAGCAGCCTAGCAAGATTGATCGTGAACTGGAGAGTGGTGAGTATTTCTTGAG
TGACAAGGTAAAGGCAGCTAAGAAATATCAAGAGAAGCAGGATAAGCAATCAGAGAAATC
AGAAGAAAAGAGAAGAAAGAGAGAAGCTGCATTTGTTCCACCAAAGGAGAATACTGCTGG
GCTATCTGAATCTGCCAAAAGTAGTAATGACAACAATGAAATTGCTGATATCACAAAATC
CTTAAAGAAAAAGGCAAAGAAATTCAGAAATAGTGAAGCTGAGGAAAACGTGAAAATCGA
GTCGTATGTTGCGAGCAACGAAGAATCACACTCCAAAAAGAAGCGCAAATTGTCATCCAA
GTAACCGCAGTACGTCAGTGACTGGGATGATAATTCTAGTTGTTTCAAGTAGTTGAACTC
TTGTCATTCAAGGAGGTCTTCAAGTTTCAAGCTTTAGTGGTGAAACAGACAAATCTTCAA
GCTTAAGTGATGAACATTGCAGTCTGTTTGTTGGTAACTGCCATCTGATTACTTCAGAAA
TATTGCAGCTTTCTTGCATAATCCACGGCTTTTAATTTACAAAATCAGATCCATCAGCAA
TCTTTTAGAAACTTATGAAGAGCAGTCAATGATAAGTCTGTTAATT

Homology of Contig U35_2017 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g31520.1	396	0.0	protein\|ribosomal RNA assembly protein mis3, putative, expressed
Brachypodium v1_2	Bradi2g48070.1	394	0.0
Arabidopsis v10	AT5G08420.1	391	1e-158	RNA-binding KH domain-containing protein \| chr5:2713555-2716064 FORWARD LENGTH=391