barSeed - Barley Seed Development Database

Probe CUST_24508_PI390587928

Source Contig U35_7210

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_24508_PI390587928	Hv_44K_v2	GTCTATTGTCGGAAATGAATCTCCCTGTCAATAAAAAGGTAACGCAGTTTACGCAAAAAA	636	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.440	1.609	1.137	0.886	0.299	0.296
Raw	525.095	917.804	562.504	678.994	83.824	87.761

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_10257.1	987	9e-22	718 - 772	100	55 / 55	plus	ABC41217 ABC47304
MLOC	AK252219.1	1588	3e-21	1535 - 1588	100	54 / 54	plus	ABC41217 ABC47304
Harvest21	ABC47304	373	3e-25	12 - 71	100	60 / 60	minus	ABC47304
Harvest35	U35_7210	707	3e-25	637 - 696	100	60 / 60	plus

Contig Sequence (707 bp)

>U35_7210 707 Hv_44K_v2
GCACGAGGGTCGTCCCGGCGATTGACAAGTTTCAACCTCAGCTTTCGGTTTTTGTCATTG
GTCAAGATTGTAGCATGTTTGATCCGAATGGAAGACAGTGCTTGACCATGGATGGTTATA
GGAAAATTGGACAGATAATGAGGAGCATGGCTAACCGACATAGCGATGGGCAAATATTGA
TTGTCCAGGAAGGGGGTTACCACATCAGTTATTCAGCATACTGCCTGCACGCGACGTTAG
AAGGTGTTTTGAATCTTGAAGCCCCGTTGCTGGACGACCCGTTGGCATATTATCCGGAGG
ATGAGAAATACGCCATGCAAGTTGTTGACGTCATGAAGAAATACTGGAAAGAATCCATTC
CCTTCTTGAGGGACATTTAGAAAACGCATTCGTCTCTTCTACATGGCGGCGATTCTGAAT
CGTGCCATGCTCGACATTCATCGCCTTCTGTTGACCGCAAAGGGTACATATGTTTATTGG
AGCAACTTCAGAATTGGTACACCTCCCCTGAACCCCTAATTCCCAGCTCCTTTGCCAGAT
GTGGTATATATGTAGGCGTCTTGTGTGATTTCGAACGGTGCTTGGTGTTTCGTTTAAGGT
TGTCTCTTGCACACCGTTTACCTGTATGCATGTATTGTCTATTGTCGGAAATGAATCTCC
CTGTCAATAAAAAGGTAACGCAGTTTACGCAAAAAAAAAAAAAAAAA

Homology of Contig U35_7210 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g36920.1	550	2e-69	protein\|histone deacetylase, putative, expressed
Brachypodium v1_2	Bradi2g24020.1	389	2e-71
Arabidopsis v10	None