barSeed - Barley Seed Development Database

Probe CUST_244_PI415269222

Source Contig TA38553_4513

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_244_PI415269222	Hv_44K_v2	ATTTTGTCGACCTATGCCAAGGCAAAATCTAGGGCGAAGAAGGATGCAGAAAGCAAAGCT	816	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_16279.2	3499	2e-24	2485 - 2544	100	60 / 60	plus	ABC09627
MLOC	MLOC_16279.1	3519	2e-24	2622 - 2681	100	60 / 60	plus	ABC09627
MLOC	MLOC_60006.1	3252	7e-23	2603 - 2662	98	59 / 60	plus	ABC09627
JLOC1	JLOC1_11206.1	3493	8e-25	2537 - 2596	100	60 / 60	plus
Harvest21	ABC09627	1690	3e-25	885 - 944	100	60 / 60	plus	ABC09627
Harvest35	U35_18799	1692	3e-25	887 - 946	100	60 / 60	plus

Contig Sequence (1538 bp)

>TA38553_4513 1538 Hv_44K_v2
CGGCACGAGGCTGACACCTTGATCGAACAAATGACTAGAGATCAAGATCCCATACTACGA
TATGGTGGTATGTATGCATTGGCTCTAGCCTACAGAGGAACTGCAAATAACAAAGCTATC
CATCAGTTGCTGCATTTTGCTGTATCGGATGTCAGTGATGATGTTCGTAGGACTGCAGTT
ATGGGTCTTGGATTTGTTCTATACAACGAACCGGAGCAGACTCCAAGAATTGTGTCCCTG
CTCTCTGAATCGTACAACCCGCATGTTCGCTATGGTGCTGCTTTAGCTGTTGGGATATCC
TGTGCCGGAACAGGGTTAAGTGATGCCATTTCCTTGTTGGAGCCTCTCACATCAGACGTT
GTTGACTTTGTGCGCCAGGGGGCTCTAATTGCTATGGCAATGGTCATGATCCAGACGAAT
GAATCCTTTGATTCTCGTGTTGGAACATTCAGGCGTCAGTTGGAGAAGATCATTCTTGAC
AAGCATGAGGACACCATGAGCAAAATGGGTGCCATACTTGCTTCTGGTATTCTGGATGCT
GGTGGTAGGAATGTCACAATCAAACTTCTCTCGAGGAACAAGCATGACAAGCTCACTGCT
GTGATTGGCCTTGCTGTTTTCACCCAGTTCTGGTACTGGTATCCACTCCTATACTTCATC
AGTTTGGCCTTCTCGCCAACAGCCATCATTGGTCTCAACTCAAACCTGGAAGTGCCGAAG
TTTGAATTTCTGTCACATGCTAAACCGTCCCTCTTTGAGTATCCCAAACCGACCACTCAG
CAGACTACAACTTCAGCTGTCAAGCTGCCCACAGCCATTTTGTCGACCTATGCCAAGGCA
AAATCTAGGGCGAAGAAGGATGCAGAAAGCAAAGCTGCTAACCAGGAGAAGACAGCTGAA
GCAGAGAGCAAAGCTAACCAGGAGAAGTCAACAGCAGAAAGCAAACCTAGCCAGGAGAAA
TCAACGGAGGCAGAAAGCAAAGCCAAGACGACGGAGGATGCTTCTGGTTCTACTGCAGGC
GAGGCATCTAAAACACAGGAGAAGGACGGTGATGCAATGCAGGTTGACGGCGCATCAGAG
AAGAAGGCCCCGGAGCCAGAACCTGCCTTGCAGATCCTGACGAACCCAGCCCGCGTTGGT
GCCGCGCATGAGAAGGTCATGGAGGTCATGGAGGGCGGGCGGTGCGGGCCTGGAAGGCCC
GCACCCTGCGGGGGGATGCTGCTGGGGGACACGCAGGCCATCGAGGCTGAGGATCTGAAA
CTGACCGGCGCCCACGGGGACTGGGGGCACGGGCAGGCGGGGCGACGGTGGGGGCGGTGG
TGGGGGGGCAGTCTGGGTGCGGCTGGGCGGGGGCGACGAGCCCCGGGGCCGCGGGCCTTG
GGGGGTCTGGGGGCTGGGCTGGGGAGGATGGGGGGAACCGGGGGGGGGCTGGGCTGGCGG
GCCTGCAGGAGGTGTTGGGTGCTCGGGTGATAGGCCGGAATGCAGCGGGCTGAGGTACGC
TGGTTGTGTGCCCACATGGCACCGGACTGTGTACCCCC

Homology of Contig TA38553_4513 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os04g51910.1	782	protein\|proteasome/cyclosome repeat containing protein, expressed
Brachypodium v1_2	Bradi5g21080.1	1021
Arabidopsis v10	AT2G32730.1	1004	26S proteasome regulatory complex, non-ATPase subcomplex, Rpn2/Psmd1 subunit \| chr2:13880189-13885464 FORWARD LENGTH=1004