barSeed - Barley Seed Development Database

Probe CUST_24499_PI390587928

Source Contig U35_7221

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_24499_PI390587928	Hv_44K_v2	TATTATGTGGATGATGCATGTCGCCCTGCTGGTTATGTGAAGAAATGAGAGCACCCTTGT	347	GeneList: saddlebrown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.401	0.379	0.620	1.895	1.567	1.781
Raw	79.465	119.690	175.746	819.141	241.190	297.885

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK367399	1984	2e-24	1921 - 1980	100	60 / 60	plus	ABC19947
MLOC	AK371126	2131	2e-24	2056 - 2115	100	60 / 60	plus	ABC19947
MLOC	MLOC_67330.2	1737	3e-21	1403 - 1462	97	58 / 60	plus	ABC19947
JLOC1	JLOC1_44445.2	1651	2e-21	1416 - 1475	97	58 / 60	plus
JLOC1	JLOC1_44445.1	897	2e-21	789 - 848	97	58 / 60	plus
Harvest21	ABC19947	440	3e-25	348 - 407	100	60 / 60	plus	ABC19947
Harvest21	ABC29292	324	2e-21	219 - 277	97	57 / 59	plus
Harvest35	U35_7221	451	3e-25	348 - 407	100	60 / 60	plus

Contig Sequence (451 bp)

>U35_7221 451 Hv_44K_v2
GGCCTCAAGGAGGGCGCCGGCGGCGTGGTGACCGCGGCGGAGGTGATCGCGTGGAGCCGG
GAGCGCATGCCCGGGTACATGGTGCCCAAGACCGTGGTGTTCCGCGCCGAGCTGCCCAAG
ACGTCCACCGGCAAGATTCAGAAGTACGTGCTCCGGAACCTCGCCAAGGAGATGGGCCCA
ACCCGCAGGGGCGTCAGCAGCAAGATGTAGTATAATTGCTGTGGAAATTCAGGGTTGTGT
CGTCTTGCCTGGCTTGATCTGCAGCAGCATGGCAATGACATTGGCACGTCTGCTCTGGAG
ATCAGCATTCAGCAAGCCTGTCTGCTGCAGCTGCAGCTGCAAGATTGTATTATGTGGATG
ATGCATGTCGCCCTGCTGGTTATGTGAAGAAATGAGAGCACCCTTGTCCCTTGTTAAAAA
AAAAAAAAAAAAAGAAAAAAAAAAAAAAAAA

Homology of Contig U35_7221 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None